NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS25445.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25445.1 Public Mus musculus 11 Hsd17b1 23 108 98 CCDS HistoryNCBI Gene:15485Re-query CCDS DB by CCDS ID:25445.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25445.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000019445.5 ENSMUSP00000019445.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000019445.5Link to Ensembl Protein Viewer:ENSMUSP00000019445.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000019445Re-query CCDS DB by Protein ID:ENSMUSP00000019445
Original member Current member NCBI NM_010475.2 NP_034605.1 Accepted alive Link to Nucleotide Sequence:NM_010475.2Link to Protein Sequence:NP_034605.1Re-query CCDS DB by Nucleotide ID:NM_010475Re-query CCDS DB by Protein ID:NP_034605Link to BLAST:NP_034605.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034605.1 344 P51656 344 100% 0 0

Chromosomal Locations for CCDS 25445.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 101078442 101078538 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 101078626 101078793 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 101078929 101079108 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 101079189 101079282 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 101079660 101079834 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 101079934 101080254 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1035 nt):
ATGGACCCCACGGTAGTGCTCATTACCGGTTGCTCCTCTGGAATCGGCATGCACTTGGCTGTTCGCCTAG
CTTCTGACCGTTCCCAGAGCTTCAAAGTTTATGCCACATTGCGGGACCTGAAGGCACAGGGACCATTGTT
GGAGGCCGCCAGGACTCAAGGATGCCCTCCTGGCTCCTTGGAGATACTGGAATTGGATGTCAGAGACTCC
AAATCTGTGGCTGCTGCCCAGGCATGCGTGACTGAGGGTCGTGTGGATGTACTGGTCTGTAATGCTGGCC
GCGGCTTGTTTGGGCCGCTAGAAGCACATGAATTGAACGCTGTGGGTGCTGTGTTGGATGTGAATGTGCT
TGGGACCATTCGGATGCTGCAGGCCTTTCTGCCAGACATGAAGAGGCGCCACTCTGGGCGTGTGCTGGTG
ACCGCGAGTGTGGGAGGCTTGATGGGACTGCCATTCCACGAAGTGTACTGTGCCAGCAAGTTTGCGCTCG
AAGGTTTGTGCGAGAGTCTGGCGATCCTGCTGCCGCTCTTTGGAGTCCATGTGAGCCTCATCGAGTGTGG
GGCAGTGCACACAGCCTTCTATGAAAAGCTGGTGGGCGGCCCCGGCGGGGCTCTGGAACGAGCAGATGCC
CAGACCCGCCACCTCTTTGCGCACTACCTGCGTGGTTATGAGCAAGCCCTGAGCGAGGCGCAGGACCCAG
AGGAGGTGACGGAGCTCTTCTTGACTGCAATGCGAGCCCCGCAGCCCGCGCTGCGCTACTTCTCCACGAA
CCGCTTCCTACCCCTGGCCCGAATGCGCACAGAGGATCCCAGTGGCAGCAGCTATGTCGCGGCCATGCAC
CAAGAAGCCTTCTCTAATCTGCAGACCCAGGAGAATGCCAAGGCTGGGGCCCAAGTCCCGGGGGTCTCGG
ACACGGCCTCCAGCGCCCTCATTTGCCTCCCTGAATGTGCAATCCCTAGGGTGGCATCTGAATTGGGGTG
GTCTGCATCGGATAAACCGGGTCAGGACAATTCATGTTACCAGCAAAAGATCTAA

Translation (344 aa):
MDPTVVLITGCSSGIGMHLAVRLASDRSQSFKVYATLRDLKAQGPLLEAARTQGCPPGSLEILELDVRDS
KSVAAAQACVTEGRVDVLVCNAGRGLFGPLEAHELNAVGAVLDVNVLGTIRMLQAFLPDMKRRHSGRVLV
TASVGGLMGLPFHEVYCASKFALEGLCESLAILLPLFGVHVSLIECGAVHTAFYEKLVGGPGGALERADA
QTRHLFAHYLRGYEQALSEAQDPEEVTELFLTAMRAPQPALRYFSTNRFLPLARMRTEDPSGSSYVAAMH
QEAFSNLQTQENAKAGAQVPGVSDTASSALICLPECAIPRVASELGWSASDKPGQDNSCYQQKI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH