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Report for CCDS15370.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15370.1 Public Mus musculus 1 Lamc1 23 108 98 CCDS HistoryNCBI Gene:226519Re-query CCDS DB by CCDS ID:15370.1Re-query CCDS DB by GeneID:226519See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15370.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000027752.14 ENSMUSP00000027752.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000027752.14Link to Ensembl Protein Viewer:ENSMUSP00000027752.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000027752Re-query CCDS DB by Protein ID:ENSMUSP00000027752
Original member Current member NCBI NM_010683.2 NP_034813.2 Accepted alive Link to Nucleotide Sequence:NM_010683.2Link to Protein Sequence:NP_034813.2Re-query CCDS DB by Nucleotide ID:NM_010683Re-query CCDS DB by Protein ID:NP_034813Link to BLAST:NP_034813.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034813.2 1607 P02468 1607 99.4399% 0 9

Chromosomal Locations for CCDS 15370.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 153221473 153221729 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 153223659 153223758 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 153226384 153226542 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 153227511 153227710 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 153228735 153228849 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 153229042 153229191 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 153230722 153230866 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 153231734 153231871 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 153233485 153233564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 153234448 153234653 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 153239255 153239411 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 153240317 153240495 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 153241877 153242019 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 153242629 153242782 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 153243231 153243476 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 153246938 153247126 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 153247237 153247458 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 153249040 153249152 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 153249565 153249754 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 153249845 153249967 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 153250387 153250523 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 153250612 153250710 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 153251077 153251194 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 153251952 153252140 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 153255189 153255355 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 153258076 153258206 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 153262390 153262694 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 153332128 153332539 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4824 nt):
ATGACGGGCGGCGGGCGGGCCGCGCTGGCCCTGCAGCCCCGGGGGCGGCTGTGGCCGCTGTTGGCTGTGC
TGGCGGCTGTGGCGGGCTGTGTCCGGGCGGCCATGGACGAGTGCGCGGATGAGGGCGGGCGGCCGCAGCG
CTGCATGCCGGAGTTTGTTAATGCCGCCTTCAATGTGACCGTGGTGGCTACCAACACGTGTGGGACTCCG
CCCGAGGAGTACTGCGTGCAGACTGGGGTGACCGGAGTCACTAAGTCCTGTCACCTGTGCGACGCCGGCC
AGCAGCACCTGCAACACGGGGCAGCCTTCCTGACCGACTACAACAACCAGGCCGACACCACCTGGTGGCA
AAGCCAGACTATGCTGGCCGGGGTGCAGTACCCCAACTCCATCAACCTCACGCTGCACCTGGGAAAGGCT
TTTGACATCACTTACGTGCGCCTCAAGTTCCACACCAGCCGTCCAGAGAGCTTCGCCATCTATAAGCGCA
CTCGGGAAGACGGGCCCTGGATTCCTTATCAGTACTACAGTGGGTCCTGTGAGAACACGTACTCAAAGGC
TAACCGTGGCTTCATCAGGACCGGAGGGGACGAGCAGCAGGCCTTGTGTACTGATGAATTCAGTGACATT
TCCCCCCTCACCGGTGGCAACGTGGCCTTTTCAACCCTGGAAGGACGGCCGAGTGCCTACAACTTTGACA
ACAGCCCTGTGCTCCAGGAATGGGTAACTGCCACTGACATCAGAGTGACGCTCAATCGCCTGAACACCTT
TGGAGATGAAGTGTTTAACGACCCCAAAGTTCTCAAGTCTTACTATTACGCAATCTCAGACTTTGCTGTG
GGCGGCAGGTGTAAATGTAACGGACATGCCAGCGAGTGTGTAAAGAACGAGTTTGACAAACTCATGTGCA
ACTGCAAACATAACACATACGGAGTTGACTGTGAAAAGTGCCTGCCTTTCTTCAATGACCGGCCGTGGAG
GAGGGCGACTGCTGAGAGCGCCAGCGAGTGCCTTCCTTGTGACTGCAATGGCCGATCCCAAGAGTGCTAC
TTTGATCCTGAACTATACCGTTCCACTGGACATGGTGGCCACTGTACCAACTGCCGGGATAACACAGATG
GTGCCAAGTGCGAGAGGTGCCGGGAGAATTTCTTCCGCCTGGGGAACACTGAAGCCTGCTCTCCGTGCCA
CTGCAGCCCTGTTGGTTCTCTCAGCACACAGTGTGACAGTTACGGCAGATGCAGCTGTAAGCCAGGAGTG
ATGGGTGACAAGTGTGACCGTTGTCAGCCTGGGTTCCATTCCCTCACTGAGGCAGGATGCAGGCCATGCT
CCTGCGATCCTTCGGGCAGCACAGACGAGTGTAATGTTGAAACAGGAAGATGCGTTTGCAAAGACAATGT
TGAAGGCTTCAACTGTGAGAGATGCAAACCTGGATTTTTTAATCTGGAGTCATCTAATCCTAAGGGCTGC
ACACCCTGCTTCTGCTTTGGCCATTCTTCTGTGTGCACAAATGCTGTTGGCTACAGTGTTTATGACATCT
CCTCCACCTTTCAGATTGATGAGGATGGGTGGCGCGTGGAGCAGAGAGATGGCTCGGAGGCGTCTCTGGA
GTGGTCCTCAGACAGGCAAGATATTGCCGTAATCTCAGACAGTTACTTTCCTAGATACTTCATCGCCCCT
GTGAAGTTCCTGGGCAACCAGGTCCTGAGTTATGGGCAGAATCTTTCCTTCTCCTTCCGAGTGGACAGAC
GAGACACTCGCCTCTCCGCAGAGGACCTTGTGCTCGAAGGAGCTGGCTTGAGAGTATCCGTGCCCTTGAT
CGCTCAGGGCAACTCCTACCCCAGCGAGACCACTGTGAAGTACATCTTCAGGCTCCATGAAGCAACGGAT
TACCCTTGGAGGCCCGCTCTCTCCCCGTTTGAATTTCAGAAGCTCCTGAACAACTTGACCTCTATCAAGA
TCCGTGGTACATACAGCGAGAGGAGCGCTGGGTACTTGGATGATGTCACCTTGCAAAGTGCTCGCCCTGG
GCCCGGAGTCCCTGCAACGTGGGTGGAGTCCTGCACCTGTCCAGTGGGATACGGGGGACAGTTCTGTGAG
ACGTGCCTCCCAGGGTACAGAAGAGAAACTCCAAGCCTTGGACCTTATAGCCCGTGTGTGCTCTGTACCT
GTAATGGGCACAGTGAGACCTGTGACCCGGAGACAGGTGTCTGTGACTGCAGAGACAATACAGCCGGCCC
CCACTGTGAGAAATGTAGCGATGGGTACTATGGGGACTCAACCCTGGGCACCTCCTCTGACTGCCAGCCT
TGTCCCTGCCCCGGTGGCTCAAGTTGTGCCATTGTCCCAAAGACAAAGGAAGTGGTGTGCACGCACTGTC
CGACTGGCACTGCCGGCAAGAGATGTGAACTCTGTGATGACGGCTACTTTGGAGACCCTCTGGGCAGCAA
TGGGCCTGTGAGACTGTGCCGCCCGTGCCAGTGTAACGACAACATAGACCCCAACGCGGTTGGCAACTGC
AACCGCCTGACGGGCGAGTGCCTGAAGTGCATCTATAACACGGCTGGTTTCTACTGCGACCGGTGCAAGG
AAGGGTTTTTCGGAAATCCCCTGGCTCCCAATCCAGCCGACAAATGCAAAGCCTGCGCCTGCAATCCCTA
CGGGACAGTGCAGCAACAGAGCAGCTGTAACCCGGTGACCGGACAGTGCCAGTGTCTGCCTCATGTGTCT
GGCCGCGACTGCGGTACTTGTGACCCTGGCTACTACAACCTGCAGAGCGGGCAAGGCTGCGAGAGGTGTG
ACTGCCATGCTTTGGGTTCCACCAATGGGCAGTGTGACATCCGCACCGGGCAGTGTGAGTGCCAGCCTGG
CATCACCGGCCAGCACTGTGAGCGCTGTGAGACCAACCACTTTGGGTTTGGACCTGAAGGCTGCAAACCT
TGTGACTGTCACCATGAAGGATCCCTTTCACTCCAGTGTAAAGAGGACGGCCGTTGTGAATGCAGGGAAG
GCTTTGTGGGCAATCGCTGTGACCAGTGTGAAGAGAACTATTTCTACAATCGGTCCTGGCCTGGCTGCCA
GGAGTGTCCGGCTTGTTACCGACTGGTGAAGGATAAGGTTGCTGAGCATCGAGTGAAACTCCAGGAGTTA
GAGAGCCTCATCGCCAACCTTGGCACTGGGGATGACATGGTGACAGATCAAGCCTTTGAGGACAGACTTA
AGGAAGCAGAAAGGGAGGTGACAGACCTTCTCCGTGAGGCTCAGGAAGTCAAAGATGTAGATCAAAATCT
GATGGATCGCCTTCAGAGAGTAAATAGCAGCCTGCATAGCCAAATTAGCCGACTGCAGAATATCCGGAAT
ACTATCGAAGAGACCGGGATCTTGGCTGAGCGAGCACGGTCCCGAGTGGAGAGTACAGAGCAGCTGATTG
AGATCGCCTCCAGGGAGCTCGAGAAAGCAAAAATGGCTGCCGCCAATGTGTCAATCACTCAGCCAGAGTC
TACAGGGGAGCCAAACAACATGACCCTCTTGGCAGAAGAAGCCCGAAAGCTTGCAGAGCGTCATAAACAG
GAAGCCGATGACATTGTACGAGTGGCAAAGACAGCCAACGAGACTTCAGCTGAGGCATATAATCTGCTTT
TGAGGACCCTGGCAGGAGAAAATCAAACTGCGCTGGAGATTGAAGAACTTAACCGGAAGTATGAACAAGC
AAAGAACATCTCTCAGGACCTGGAGAAGCAGGCTGCCCGAGTCCATGAGGAAGCCAAGCGTGCAGGTGAC
AAAGCCGTAGAGATCTATGCCAGTGTGGCCCAGCTGACCCCTGTGGACTCTGAGGCCCTGGAGAATGAAG
CAAATAAAATCAAGAAAGAAGCTGCAGACCTGGACCGTCTGATTGACCAGAAGCTAAAGGATTACGAGGA
CCTCAGGGAAGACATGAGAGGAAAGGAACATGAAGTGAAGAACCTTCTAGAGAAGGGGAAAGCTGAACAG
CAGACCGCCGACCAACTCCTAGCTCGAGCCGATGCTGCCAAGGCCCTTGCTGAAGAAGCTGCTAAGAAGG
GACGCAGTACCTTACAAGAAGCCAATGACATTCTCAACAACCTGAAAGATTTTGATAGACGCGTGAACGA
TAACAAGACAGCCGCGGAAGAAGCTCTAAGGAGAATTCCCGCCATCAACCGGACCATAGCTGAAGCCAAT
GAGAAGACAAGGGAGGCCCAGCTAGCGCTGGGCAATGCTGCCGCTGACGCCACGGAGGCCAAGAACAAGG
CCCATGAGGCAGAGAGGATTGCCAGCGCCGTGCAGAAGAATGCCACCAGTACCAAGGCGGACGCAGAAAG
AACCTTCGGGGAAGTTACAGATCTGGATAATGAGGTGAATGGTATGCTGAGGCAGCTGGAGGAGGCAGAG
AATGAGCTGAAGAAGAAGCAAGATGATGCCGACCAGGACATGATGATGGCAGGGATGGCTTCGCAGGCTG
CTCAGGAGGCTGAGCTCAATGCCAGAAAGGCCAAAAACTCTGTCAGCAGCCTCCTCAGCCAGCTGAACAA
CCTCTTGGATCAGCTAGGACAGCTGGACACAGTGGACCTGAACAAGCTCAATGAGATCGAAGGCTCCCTG
AACAAAGCCAAAGACGAAATGAAGGCCAGCGACCTGGACAGGAAGGTGTCTGACCTGGAGAGCGAGGCTC
GGAAGCAGGAGGCAGCCATCATGGACTATAACCGGGACATAGCAGAGATCATTAAGGATATTCACAACCT
GGAGGACATCAAGAAGACCCTACCAACCGGCTGCTTCAACACCCCGTCCATCGAGAAGCCCTAG

Translation (1607 aa):
MTGGGRAALALQPRGRLWPLLAVLAAVAGCVRAAMDECADEGGRPQRCMPEFVNAAFNVTVVATNTCGTP
PEEYCVQTGVTGVTKSCHLCDAGQQHLQHGAAFLTDYNNQADTTWWQSQTMLAGVQYPNSINLTLHLGKA
FDITYVRLKFHTSRPESFAIYKRTREDGPWIPYQYYSGSCENTYSKANRGFIRTGGDEQQALCTDEFSDI
SPLTGGNVAFSTLEGRPSAYNFDNSPVLQEWVTATDIRVTLNRLNTFGDEVFNDPKVLKSYYYAISDFAV
GGRCKCNGHASECVKNEFDKLMCNCKHNTYGVDCEKCLPFFNDRPWRRATAESASECLPCDCNGRSQECY
FDPELYRSTGHGGHCTNCRDNTDGAKCERCRENFFRLGNTEACSPCHCSPVGSLSTQCDSYGRCSCKPGV
MGDKCDRCQPGFHSLTEAGCRPCSCDPSGSTDECNVETGRCVCKDNVEGFNCERCKPGFFNLESSNPKGC
TPCFCFGHSSVCTNAVGYSVYDISSTFQIDEDGWRVEQRDGSEASLEWSSDRQDIAVISDSYFPRYFIAP
VKFLGNQVLSYGQNLSFSFRVDRRDTRLSAEDLVLEGAGLRVSVPLIAQGNSYPSETTVKYIFRLHEATD
YPWRPALSPFEFQKLLNNLTSIKIRGTYSERSAGYLDDVTLQSARPGPGVPATWVESCTCPVGYGGQFCE
TCLPGYRRETPSLGPYSPCVLCTCNGHSETCDPETGVCDCRDNTAGPHCEKCSDGYYGDSTLGTSSDCQP
CPCPGGSSCAIVPKTKEVVCTHCPTGTAGKRCELCDDGYFGDPLGSNGPVRLCRPCQCNDNIDPNAVGNC
NRLTGECLKCIYNTAGFYCDRCKEGFFGNPLAPNPADKCKACACNPYGTVQQQSSCNPVTGQCQCLPHVS
GRDCGTCDPGYYNLQSGQGCERCDCHALGSTNGQCDIRTGQCECQPGITGQHCERCETNHFGFGPEGCKP
CDCHHEGSLSLQCKEDGRCECREGFVGNRCDQCEENYFYNRSWPGCQECPACYRLVKDKVAEHRVKLQEL
ESLIANLGTGDDMVTDQAFEDRLKEAEREVTDLLREAQEVKDVDQNLMDRLQRVNSSLHSQISRLQNIRN
TIEETGILAERARSRVESTEQLIEIASRELEKAKMAAANVSITQPESTGEPNNMTLLAEEARKLAERHKQ
EADDIVRVAKTANETSAEAYNLLLRTLAGENQTALEIEELNRKYEQAKNISQDLEKQAARVHEEAKRAGD
KAVEIYASVAQLTPVDSEALENEANKIKKEAADLDRLIDQKLKDYEDLREDMRGKEHEVKNLLEKGKAEQ
QTADQLLARADAAKALAEEAAKKGRSTLQEANDILNNLKDFDRRVNDNKTAAEEALRRIPAINRTIAEAN
EKTREAQLALGNAAADATEAKNKAHEAERIASAVQKNATSTKADAERTFGEVTDLDNEVNGMLRQLEEAE
NELKKKQDDADQDMMMAGMASQAAQEAELNARKAKNSVSSLLSQLNNLLDQLGQLDTVDLNKLNEIEGSL
NKAKDEMKASDLDRKVSDLESEARKQEAAIMDYNRDIAEIIKDIHNLEDIKKTLPTGCFNTPSIEKP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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