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Report for CCDS18383.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18383.1 Public Mus musculus 4 Foxd3 23 108 98 CCDS HistoryNCBI Gene:15221Re-query CCDS DB by CCDS ID:18383.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18383.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000087285.4 ENSMUSP00000084541.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000087285.4Link to Ensembl Protein Viewer:ENSMUSP00000084541.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000087285Re-query CCDS DB by Protein ID:ENSMUSP00000084541
Original member Current member NCBI NM_010425.3 NP_034555.3 Accepted alive Link to Nucleotide Sequence:NM_010425.3Link to Protein Sequence:NP_034555.3Re-query CCDS DB by Nucleotide ID:NM_010425Re-query CCDS DB by Protein ID:NP_034555Link to BLAST:NP_034555.3

Chromosomal Locations for CCDS 18383.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 99656625 99658034 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1410 nt):
ATGACCCTCTCCGGCAGCGGCAGCGCCAGCGATATGTCCGGCCAGACGGTGCTGACGGCCGAGGACGTGG
ACATCGATGTGGTGGGCGAGGGCGACGACGGGCTGGAGGAGAAGGACAGCGACGCCGGGTGCGACAGCCC
CGCGGGGCCTCCGGACCTGCGCCTGGACGAGGCGGACGAAGGGCCACCGGTGAGCGCTCATCACGGCCAG
TCTCAACCGCAAGCCCTGGCACTGCCCACCGAGGCGACCGGGCCGGGGAACGACACGGGAGCTCCGGAGG
CCGACGGCTGCAAGGGCGGCGAGGACGCGGTGACAGGCGGCGGTGGGCCCGGCGCGGGCAGCGGGGCGAC
GGGAGGTCTGACCCCGAACAAGCCCAAGAACAGCCTGGTGAAGCCACCCTACTCTTACATCGCGCTCATC
ACCATGGCCATCCTGCAGAGCCCGCAGAAGAAGCTGACCCTGAGCGGCATCTGCGAGTTCATCAGCAACC
GTTTTCCGTACTACCGGGAGAAGTTCCCCGCCTGGCAGAACAGCATCCGCCACAACCTGTCGCTCAACGA
CTGCTTCGTCAAGATCCCCCGCGAGCCGGGCAACCCGGGCAAGGGCAACTACTGGACCCTGGACCCCCAG
TCCGAGGACATGTTCGACAACGGCAGCTTCCTGCGGCGCCGGAAGCGCTTCAAGCGCCACCAGCAGGAGC
ACCTGCGCGAGCAGACGGCGCTGATGATGCAGAGCTTCGGAGCCTACAGCCTGGCGGCGGCGGCGGGCGC
AGGACCCTACGGCCGCCCCTACGGCCTGCACCCCGCGGCGGCTGCGGGCGCCTACTCGCACCCCGCGGCG
GCGGCGGCGGCCGCGGCTGCTGCGGCGCTCCAGTACCCGTACGCGCTACCACCCGTGGCTCCCGTGCTGC
CGCCCGCAGTGCCCCTGCTGCCCTCGGGCGAGCTGGGCCGCAAAGCGGCCGCCTTCGGCTCGCAGCTCGG
TCCGAGCCTGCAGCTACAGCTCAACACCCTGGGCGCCGCCGCGGCAGCCGCGGGCACGGCGGGCGCGGCG
GGCACCACGTCGCTCATCAAGTCCGAGCCCAGTGCGCGGCCGTCGTTCAGCATCGAGAACATCATAGGCG
CGGGATCCGCGGCGCCCGGGGGCTCGGCTGGGGGTGGTGGGAGCGGCGGCGGAGCCGGGGGTGGCGGGGG
CAGTGGGGGCGGCGGCGGCGCGCAGTCCTTCCTGCGGCCGCCCGGGACTGTGCAGTCGGCTGCGCTCATG
GCCACGCACCAGCCCCTGTCGCTGAGCCGGACGACTGCCACCATCGCGCCCATTCTGAGCGTGCCGCTGT
CTGGACAGTTCCTGCAGCCCGCAGCCTCAGCCGCAGCGGCTGCGGCCGCCGCCGTGCAAGCCAAGTGGCC
CGCTCAATAG

Translation (469 aa):
MTLSGSGSASDMSGQTVLTAEDVDIDVVGEGDDGLEEKDSDAGCDSPAGPPDLRLDEADEGPPVSAHHGQ
SQPQALALPTEATGPGNDTGAPEADGCKGGEDAVTGGGGPGAGSGATGGLTPNKPKNSLVKPPYSYIALI
TMAILQSPQKKLTLSGICEFISNRFPYYREKFPAWQNSIRHNLSLNDCFVKIPREPGNPGKGNYWTLDPQ
SEDMFDNGSFLRRRKRFKRHQQEHLREQTALMMQSFGAYSLAAAAGAGPYGRPYGLHPAAAAGAYSHPAA
AAAAAAAAALQYPYALPPVAPVLPPAVPLLPSGELGRKAAAFGSQLGPSLQLQLNTLGAAAAAAGTAGAA
GTTSLIKSEPSARPSFSIENIIGAGSAAPGGSAGGGGSGGGAGGGGGSGGGGGAQSFLRPPGTVQSAALM
ATHQPLSLSRTTATIAPILSVPLSGQFLQPAASAAAAAAAAVQAKWPAQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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