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Report for CCDS12000.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12000.1 Public Homo sapiens 18 NETO1 24 110 108 CCDS HistoryNCBI Gene:81832Re-query CCDS DB by CCDS ID:12000.1Re-query CCDS DB by GeneID:81832See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12000.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000327305.11 ENSP00000313088.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000327305.11Link to Ensembl Protein Viewer:ENSP00000313088.6Re-query CCDS DB by Nucleotide ID:ENST00000327305Re-query CCDS DB by Protein ID:ENSP00000313088
Original member Current member EBI ENST00000583169.5 ENSP00000464312.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000583169.5Link to Ensembl Protein Viewer:ENSP00000464312.1Re-query CCDS DB by Nucleotide ID:ENST00000583169Re-query CCDS DB by Protein ID:ENSP00000464312
Original member Current member NCBI NM_001201465.3 NP_001188394.2 Accepted alive Link to Nucleotide Sequence:NM_001201465.3Link to Protein Sequence:NP_001188394.2Re-query CCDS DB by Nucleotide ID:NM_001201465Re-query CCDS DB by Protein ID:NP_001188394Link to BLAST:NP_001188394.2
Original member Current member NCBI NM_001354017.2 NP_001340946.2 Accepted alive Link to Nucleotide Sequence:NM_001354017.2Link to Protein Sequence:NP_001340946.2Re-query CCDS DB by Nucleotide ID:NM_001354017Re-query CCDS DB by Protein ID:NP_001340946Link to BLAST:NP_001340946.2
Original member Current member NCBI NM_138966.5 NP_620416.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_138966.5Link to Protein Sequence:NP_620416.2Re-query CCDS DB by Nucleotide ID:NM_138966Re-query CCDS DB by Protein ID:NP_620416Link to BLAST:NP_620416.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001188394.2 533 Q8TDF5-3 533 100% 0 0
NP_001340946.2 533 Q8TDF5-3 533 100% 0 0
NP_620416.2 533 Q8TDF5-3 533 100% 0 0

Chromosomal Locations for CCDS 12000.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 18 (NC_000018.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 72749028 72749088 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 72750062 72750620 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 72756034 72756147 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 72783678 72783906 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 72794117 72794244 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 72794363 72794404 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 72858826 72859074 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 72864808 72864945 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 72865188 72865241 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 72867264 72867291 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1602 nt):
ATGATCCATGGGCGCAGCGTGCTTCACATTGTAGCAAGTTTAATCATCCTCCATTTGTCTGGGGCAACCA
AGAAAGGAACAGAAAAGCAAACCACCTCAGAAACACAGAAGTCAGTGCAGTGTGGAACTTGGACAAAACA
TGCAGAGGGAGGTATCTTTACCTCTCCCAACTATCCCAGCAAGTATCCCCCTGACCGGGAATGCATCTAC
ATCATAGAAGCCGCTCCAAGACAGTGCATTGAACTTTACTTTGATGAAAAGTACTCTATTGAACCGTCTT
GGGAGTGCAAATTTGATCATATTGAAGTTCGAGATGGACCTTTTGGCTTTTCTCCAATAATTGGACGTTT
CTGTGGACAACAAAATCCACCTGTCATAAAATCCAGTGGAAGATTTCTATGGATTAAATTTTTTGCTGAT
GGAGAGCTGGAATCTATGGGATTTTCAGCTCGATACAATTTCACACCTGATCCTGACTTTAAGGACCTTG
GAGCTTTGAAACCATTACCAGCGTGTGAGTTTGAGATGGGCGGTTCCGAAGGAATTGTGGAGTCTATACA
AATTATGAAGGAAGGCAAAGCTACTGCTAGCGAGGCTGTTGATTGCAAGTGGTACATCCGAGCACCTCCA
CGGTCCAAGATTTACTTACGATTCTTGGACTATGAGATGCAGAATTCAAATGAGTGCAAGAGGAATTTTG
TGGCTGTGTATGATGGAAGCAGTTCCGTGGAGGATTTGAAAGCTAAGTTCTGTAGCACTGTGGCTAATGA
TGTCATGCTACGCACGGGTCTTGGGGTGATCCGCATGTGGGCAGATGAGGGCAGTCGAAACAGCCGATTT
CAGATGCTCTTCACATCCTTTCAAGAACCTCCTTGTGAAGGCAACACATTCTTCTGCCATAGTAACATGT
GTATTAATAATACTTTGGTCTGCAATGGACTCCAGAACTGTGTGTATCCTTGGGATGAAAATCACTGTAA
AGAGAAGAGGAAAACCAGCCTGCTGGACCAGCTGACCAACACCAGTGGGACTGTCATTGGCGTGACTTCC
TGCATCGTGATCATCCTCATTATCATCTCTGTCATCGTACAGATCAAACAGCCTCGTAAAAAGTATGTCC
AAAGGAAATCAGACTTTGACCAGACAGTTTTCCAGGAGGTATTTGAACCTCCTCATTATGAGTTATGCAC
TCTCAGAGGGACAGGAGCTACAGCTGACTTTGCAGATGTGGCAGATGACTTTGAAAATTACCATAAACTG
CGGAGGTCATCTTCCAAATGCATTCATGACCATCACTGTGGATCACAGCTGTCCAGCACTAAAGGCAGCC
GCAGTAACCTCAGCACAAGAGATGCTTCTATCTTGACAGAGATGCCCACACAGCCAGGAAAACCCCTCAT
CCCACCCATGAACAGAAGAAATATCCTTGTCATGAAACACAGCTACTCGCAAGATGCTGCAGATGCCTGT
GACATAGATGAAATCGAAGAGGTGCCGACCACCAGTCACAGGCTGTCCAGACACGATAAAGCCGTCCAGC
GGTTCTGCCTCATTGGGTCTCTAAGCAAACATGAATCTGAATACAACACAACTAGGGTCTAG

Translation (533 aa):
MIHGRSVLHIVASLIILHLSGATKKGTEKQTTSETQKSVQCGTWTKHAEGGIFTSPNYPSKYPPDRECIY
IIEAAPRQCIELYFDEKYSIEPSWECKFDHIEVRDGPFGFSPIIGRFCGQQNPPVIKSSGRFLWIKFFAD
GELESMGFSARYNFTPDPDFKDLGALKPLPACEFEMGGSEGIVESIQIMKEGKATASEAVDCKWYIRAPP
RSKIYLRFLDYEMQNSNECKRNFVAVYDGSSSVEDLKAKFCSTVANDVMLRTGLGVIRMWADEGSRNSRF
QMLFTSFQEPPCEGNTFFCHSNMCINNTLVCNGLQNCVYPWDENHCKEKRKTSLLDQLTNTSGTVIGVTS
CIVIILIIISVIVQIKQPRKKYVQRKSDFDQTVFQEVFEPPHYELCTLRGTGATADFADVADDFENYHKL
RRSSSKCIHDHHCGSQLSSTKGSRSNLSTRDASILTEMPTQPGKPLIPPMNRRNILVMKHSYSQDAADAC
DIDEIEEVPTTSHRLSRHDKAVQRFCLIGSLSKHESEYNTTRV


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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