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Report for CCDS8772.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8772.1 Public Homo sapiens 12 CCDC65 24 110 108 CCDS HistoryNCBI Gene:85478Re-query CCDS DB by CCDS ID:8772.1Re-query CCDS DB by GeneID:85478See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8772.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000320516.5 ENSP00000312706.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000320516.5Link to Ensembl Protein Viewer:ENSP00000312706.4Re-query CCDS DB by Nucleotide ID:ENST00000320516Re-query CCDS DB by Protein ID:ENSP00000312706
Original member Current member NCBI NM_033124.5 NP_149115.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_033124.5Link to Protein Sequence:NP_149115.2Re-query CCDS DB by Nucleotide ID:NM_033124Re-query CCDS DB by Protein ID:NP_149115Link to BLAST:NP_149115.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_149115.2 484 Q8IXS2-1 484 100% 0 0

Chromosomal Locations for CCDS 8772.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 48904337 48904468 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 48904946 48905113 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 48914404 48914573 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 48916970 48917108 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 48918275 48918472 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 48918685 48918903 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 48920930 48921082 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 48921168 48921443 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1455 nt):
ATGCCTAAGAAAGAAAAAATGGCCAAGACGCCCCTGTCCGATGAGAAGCAGCTGCTTCTGTTTCAGCAGA
AGTTGCTGGCAGAGGAGGAGATGGCCAAAAAGAAGGAGAGGCTCCTCAGCCAGTTCTTGAAGGACAAGCT
GGCCAAGGAGGAACACAACAGTGCTCTGAACCTTAATAAGATTAACACACAGTGGAGAACTGTCCTTCGG
GAAGTCAAGACCAGAGAACTTCATAAGGACATTGAGATCCTCAGCCAAACATTTGAACGAGTGGTGGACT
GTAAGGACAATGTCATCAAGTCTTTAGCTAAAGACCTGTCCGAAGCCGAGGAGCAGTACGCCCATGCCCT
GCGCAGCCACTTGCACAATGTTGACCAGCTCTTGGCCCTGCAGAGGCACCGGCTCAGTCTCCTGGAGGAA
AGTTACAACATGGAGCTGGAAGCCCTAACCAAGGAGTTTGAGACAGAAAGGAAGACAATTATTGACCAAC
ATGAGAAAGAGATTCACTATCTGCAAGATATCTTCATGGCCATGGAGCAGAACTATATAGATTCTGAGTA
TGAAAGCAAGCTGGAGTTCCAGAGCATGTGGAATGATCTCAAAAACATGAATTTAGAAGAGAAGCACTTT
CTAAGACTGCACCTGGAGAACAGAGTAGAAGATCTGTGGAGAAAGTTCCAGGATGTACTCAAGAATTACA
CTGATGCCACAGAGGATCGAAAGGCTGCCTTTGAGACCCTGCAGGTGAAGGATGAGAAGAGCTCCAAAGA
GATTGAAGTACAGATGAAAAAAATACAGAAACTACAGGATGCCATAACTATTTCAAAAGGCAAGATCATG
ATACACAGCCGTGAGAGTGAAGATGAGAACCGGTATATCCGTAATGACAAGGAATTGGTCCTTGTACAAC
TGCGAAAACTTAAGGCCCAAAGAACTCAGGCCCGGGCAGCATCCCAGAAGAACTTAGTCAGACTCACCCT
GGAAAGTAATGCCACCCTCAAGGCCCTGAGAAAGATTGTTGATAAGGGTGAAAAGATCCTTAAACTTGCT
GAAATATGTAGGAAATTTGAAACCGAAGAAGAAAAAGTGCTGCCTTTTTATTCATCAGTATTGACTCCTA
AGGAGCAGGAGGGGATTCAGAAGAATAATCTAGAAGAGCTTACTGAGGAGCTCACCAAGGTGATGGTGGA
CTACATAGGAATGGAGAATTTCTGGAAAAGGTACAACAAAGTGAAACTGGAGCAACTGAGCCTCCAACAT
AGACGAGCCCAGCTGCTAGATATCAATGGGAAGCTGCGGGAGATGCTGAAGCAGTACTTGGATGGCATCT
CAGTGAGTGACGAAGTGCTGAGCCAGCTCAACCCACTCTTTATAGTCAACTATCAAAGCAACTTACTCCA
GCCCTTGTCCATACGTATAGCCCATCCAGGTGATAAACAACATCCAACCACTTAA

Translation (484 aa):
MPKKEKMAKTPLSDEKQLLLFQQKLLAEEEMAKKKERLLSQFLKDKLAKEEHNSALNLNKINTQWRTVLR
EVKTRELHKDIEILSQTFERVVDCKDNVIKSLAKDLSEAEEQYAHALRSHLHNVDQLLALQRHRLSLLEE
SYNMELEALTKEFETERKTIIDQHEKEIHYLQDIFMAMEQNYIDSEYESKLEFQSMWNDLKNMNLEEKHF
LRLHLENRVEDLWRKFQDVLKNYTDATEDRKAAFETLQVKDEKSSKEIEVQMKKIQKLQDAITISKGKIM
IHSRESEDENRYIRNDKELVLVQLRKLKAQRTQARAASQKNLVRLTLESNATLKALRKIVDKGEKILKLA
EICRKFETEEEKVLPFYSSVLTPKEQEGIQKNNLEELTEELTKVMVDYIGMENFWKRYNKVKLEQLSLQH
RRAQLLDINGKLREMLKQYLDGISVSDEVLSQLNPLFIVNYQSNLLQPLSIRIAHPGDKQHPTT


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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