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Report for CCDS38168.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38168.1 Public Mus musculus 2 Fads2b 23 108 98 CCDS HistoryNCBI Gene:228151Re-query CCDS DB by CCDS ID:38168.1Re-query CCDS DB by GeneID:228151See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 38168.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000099923.1 ENSMUSP00000097507.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000099923.1Link to Ensembl Protein Viewer:ENSMUSP00000097507.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000099923Re-query CCDS DB by Protein ID:ENSMUSP00000097507
Original member Current member NCBI NM_001081664.2 NP_001075133.1 Accepted alive Link to Nucleotide Sequence:NM_001081664.2Link to Protein Sequence:NP_001075133.1Re-query CCDS DB by Nucleotide ID:NM_001081664Re-query CCDS DB by Protein ID:NP_001075133Link to BLAST:NP_001075133.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001075133.1 487 Q0VAX3 487 100% 0 0

Chromosomal Locations for CCDS 38168.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 85484144 85484192 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 85485430 85485555 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 85486981 85487060 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 85488748 85488844 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 85490346 85490443 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 85490669 85490745 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 85493251 85493311 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 85494105 85494230 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 85500212 85500313 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 85502031 85502228 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 85508344 85508454 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 85518428 85518766 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1464 nt):
ATGAAGTTGGAGGAAAAGCTTGAGCACAATGAGAGCCTTGTTGGAAAAAGTCGACCGTGTCTCCATGACA
CGCATCAGGCAAACGGGAAACCGATAGCTAATGGGAATCCGACAGCAAATGGAAAAGTGGAGGTCTATGA
AAAGCAGGAGGCAAATGGCAAGGGCAACAGGCTCGGGAAATGTCTCAACCTGTACACCTGGCAGGAGATC
CAGAGACACAGTCAGGAAGCAGACCAGTGGCTGGTGATTGATCGCAAGGTTTACAATGTGACTGACTGGG
CTGGCAAGCATCCAGGTGGACGTCGGGTTCTCAACCACTATGCTGGGCAAGATGCAACGGATGCTTTCAG
GGCCATGCACCTGGATCTGGGCATGGTGAAGCTGTATCTTAAGCCACTACTCATTGGAGAACTTTCTCCA
GAAGAACCAAGCCAAGAGAAAAACAAAAACGCACAGTTGGTGGAAGATTTCCGTGAATTGCGCAAGACGT
TAGAGGCCATGAACATGTTCAGTGCCAACCTGCGGTTCTTCTTTCTGCACCTTGCCCAGATCTTGATCTT
GGAAATCTCAGCATGGCTAATACTACACCATTTTGGCAGCAGCTGGCTTGTTACAATACTTATTTCCTTT
CTCCTTACAGTGTCTCAGGCTCAATGTTCATTTTTACAACATGACTTAGGACACCTTTCCATGTTTAAGA
AGTCCAAGTGGAACCATCTGATGCACAAATTTGTAATGTGTCATCTCAAGGGCCTGTCAGCTGATTGGTG
GAATTATCGACACTTCCAGCATCATGTAAAACCAAATATCTACCCCAAGGATCCAGACATTGATGTGGGC
CCACTCTTTCTGGTTGGAGATACTCAGCCTATAAAGTATGGCAAGAAGAAAATAAAATACATTGACTATG
AGAAGCAGCACCTGTACTTCTACATGGTTGCACTCCCCTTCCTCATGCCTGTCTACTTTAATTTGCAATC
CATGCAAGTGATGTACCTTCGAAAATACTGGATGGACATTGCATGGGTCAGCAGCTTTTACATTCGTTAT
TTCATCACATTTGGCCCTTTCTATGGAATTTTCGGAACAGTGTTGCTCATATATTTGGTCAAGTTTATTG
AGAGCCCCTGGATTGCTTACGTTACCCAGATGAGTCACATACCAATGAAAATGAGCAGTGAAGAGAACCA
CGACTGGCTCAGCACTCAGGTTGTGGCCACCTGTAATATTGAACAGTCCTTTTTCAATGACTGGTTCACT
GGACATTTGAACTTCCAAATTGAACACCACCTCTTTCCCACAATGCCACGCCATAATTACCACAAAGTGG
CACCTCTGGTGAAGTCACTTTGTGCCAAGCATGGATTGCAGTATATAAATAAGCCCATATTGAAGGCCTT
TGGAGATATTGTCAGGTCCTTGAAGAAGTCTGCTTCCCTCTGGATGAATGCTTACTATGAATGA

Translation (487 aa):
MKLEEKLEHNESLVGKSRPCLHDTHQANGKPIANGNPTANGKVEVYEKQEANGKGNRLGKCLNLYTWQEI
QRHSQEADQWLVIDRKVYNVTDWAGKHPGGRRVLNHYAGQDATDAFRAMHLDLGMVKLYLKPLLIGELSP
EEPSQEKNKNAQLVEDFRELRKTLEAMNMFSANLRFFFLHLAQILILEISAWLILHHFGSSWLVTILISF
LLTVSQAQCSFLQHDLGHLSMFKKSKWNHLMHKFVMCHLKGLSADWWNYRHFQHHVKPNIYPKDPDIDVG
PLFLVGDTQPIKYGKKKIKYIDYEKQHLYFYMVALPFLMPVYFNLQSMQVMYLRKYWMDIAWVSSFYIRY
FITFGPFYGIFGTVLLIYLVKFIESPWIAYVTQMSHIPMKMSSEENHDWLSTQVVATCNIEQSFFNDWFT
GHLNFQIEHHLFPTMPRHNYHKVAPLVKSLCAKHGLQYINKPILKAFGDIVRSLKKSASLWMNAYYE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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