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Report for CCDS20009.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20009.2 Public Mus musculus 6 Svopl 23 108 98 CCDS HistoryNCBI Gene:320590Re-query CCDS DB by CCDS ID:20009.2Re-query CCDS DB by GeneID:320590See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 20009.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000096040.10 ENSMUSP00000093743.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000096040.10Link to Ensembl Protein Viewer:ENSMUSP00000093743.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000096040Re-query CCDS DB by Protein ID:ENSMUSP00000093743
Original member Current member NCBI NM_177200.4 NP_796174.2 Accepted alive Link to Nucleotide Sequence:NM_177200.4Link to Protein Sequence:NP_796174.2Re-query CCDS DB by Nucleotide ID:NM_177200Re-query CCDS DB by Protein ID:NP_796174Link to BLAST:NP_796174.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_796174.2 494 Q6PDF3-1 494 100% 0 0

Chromosomal Locations for CCDS 20009.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 37984512 37984523 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 37986498 37986611 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 38011239 38011328 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 38012291 38012372 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 38014757 38014868 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 38017020 38017231 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 38019678 38019751 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 38021549 38021677 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 38022994 38023119 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 38026950 38027013 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 38029591 38029715 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 38031019 38031090 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 38036713 38036811 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 38041071 38041162 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 38041534 38041615 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1485 nt):
ATGGCAGCCAAGCAGACAGAGCCCGTGACAATCATCAGCCTTCGGAAACTGAGCCAGGCAGCCCCAGAAC
CGCAGCAGAAAGAGACCAAGACATTCACGGTGGAGGATGCGGTGGAGACCATCGGCTTCGGGCGCTTCCA
CATTGCACTCTTCCTAATCATGGGCAGCACCGGGGTTGTGGAGGCCATGGAGATCATGTTAATAGCAGTT
GTGTCTCCTGTTATCCGATGTGAATGGCAGCTGGAGAACTGGCAGGTGGCATTTGTCACCACGATGGTGT
TTTTTGGCTACATGGTATCCAGCATCCTTTTTGGTCTCCTGGCTGACAGATATGGCCGCTGGAAGATTTT
GCTGCTCTCGTTCCTGTGGGGAGCCTACTTCTCCTTACTGACCTCTTTCTCCCCCTCCTACATCTGGTTT
GTCTTTCTGCGGACGATGGTAGGCTGTGGAGTGTCTGGCCATGCTCAAGGGTTAATCATAAAGACTGAAT
TTTTGCCCACAAAATACCGAGGCTACATGCTGCCCTTGTCGCAGGTTTTCTGGCTTGCTGGCTCCCTGCT
CATCATCAGCATGGCCTCTGTGGTCATCCCCACCATTGGGTGGCGTTGGCTCATCCGCATCGCCTCCATC
CCTGGCATCATCCTCATCATGGCCTTCAAGTTTATCCCTGAATCTGCTCGCTTCAACGTCTCCACTGGGA
ACACCCAGGCTGCACTGAACACCCTAGAGAGCATTGCCAAGATGAACCGCTCAGTCATGCCAGAGGGACA
GCTGGTGGAGCCCATCCTGGAGAAAAGAGGAAGATTTGCAGATCTACTAGATTCTAAATACCTTCGGACC
ACATTACAGATCTGGATCATATGGCTGGGAATTTCTTTTGCCTATTATGGGGTCATCCTGGCCAGCGCTG
AGTTGCTCGAGCGGGATCTGGTCTGCGGTTCAAAGTCGGAGTCAGAACCGGAGGTGGTGGAGACCACAGG
GGACTCAGGGGAGGGTCTGAGTCCCTGCTATTGCCACATATTTGCACCCTCTGACTACAGGACCATGATC
ATCAGCACCCTCGGGGAAATCGCTTTGAACCCTTTAAACATCCTGGGCATCAATTTCCTGGGCAGACGGC
TGAGCCTGTCGATCACCATGGGATGCACGGCGCTGTTTTTCCTTCTCCTCAATATCTGCACTTCAAGTGC
AGGCCTCATTGGCTTCCTCTTCATGCTGAGGGCCCTGGTGGCAGCAAACTTCAACACCATCTACATTTAC
ACTGCTGAGGTCTACCCAACCCCGATGCGTGCTATAGGGATGGGAACCAGCGGCTCCCTGTGTCGCATTG
GAGCAATGGTAGCTCCATTTATATCCCAGGTCCTAATGAGTGCCTCATTCTTGGGAGCCCTGTGTCTTTT
CTCATCTGTCTGTGTTGTGTGCGCTATTTCTGCATTTACTCTTCCCATTGAGACCAAAGGACGCGCTTTG
CAGCAAATTAAATGA

Translation (494 aa):
MAAKQTEPVTIISLRKLSQAAPEPQQKETKTFTVEDAVETIGFGRFHIALFLIMGSTGVVEAMEIMLIAV
VSPVIRCEWQLENWQVAFVTTMVFFGYMVSSILFGLLADRYGRWKILLLSFLWGAYFSLLTSFSPSYIWF
VFLRTMVGCGVSGHAQGLIIKTEFLPTKYRGYMLPLSQVFWLAGSLLIISMASVVIPTIGWRWLIRIASI
PGIILIMAFKFIPESARFNVSTGNTQAALNTLESIAKMNRSVMPEGQLVEPILEKRGRFADLLDSKYLRT
TLQIWIIWLGISFAYYGVILASAELLERDLVCGSKSESEPEVVETTGDSGEGLSPCYCHIFAPSDYRTMI
ISTLGEIALNPLNILGINFLGRRLSLSITMGCTALFFLLLNICTSSAGLIGFLFMLRALVAANFNTIYIY
TAEVYPTPMRAIGMGTSGSLCRIGAMVAPFISQVLMSASFLGALCLFSSVCVVCAISAFTLPIETKGRAL
QQIK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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