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Report for CCDS49352.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49352.1 Public Mus musculus 13 Trappc13 23 108 98 CCDS HistoryNCBI Gene:66975Re-query CCDS DB by CCDS ID:49352.1Re-query CCDS DB by GeneID:66975See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49352.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000141557.7 ENSMUSP00000118316.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000141557.7Link to Ensembl Protein Viewer:ENSMUSP00000118316.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000141557Re-query CCDS DB by Protein ID:ENSMUSP00000118316
Original member Current member NCBI NM_001093759.1 NP_001087228.1 Accepted alive Link to Nucleotide Sequence:NM_001093759.1Link to Protein Sequence:NP_001087228.1Re-query CCDS DB by Nucleotide ID:NM_001093759Re-query CCDS DB by Protein ID:NP_001087228Link to BLAST:NP_001087228.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001087228.1 417 Q3TIR1-1 417 100% 0 0

Chromosomal Locations for CCDS 49352.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 104144138 104144245 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 104144404 104144551 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 104147244 104147344 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 104148084 104148282 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 104150050 104150183 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 104152165 104152182 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 104154296 104154340 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 104154837 104154909 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 104160967 104161094 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 104166859 104166943 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 104168463 104168562 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 104169820 104169888 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 104178114 104178159 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1254 nt):
ATGGAAGTGAATCCCCCCAAACAGGAGCACCTGCTGGCGCTAAAAGTGATGCGATTGACTAAACCTACTT
TGTTCACCAATATTCCTGTAACGTGTGAAGAGAAGGACTTACCTGGTGATCTCTTTAACCAGTTAATGAA
AGATGATCCTTCAACTGTAAATGGTGCAGAGATTTTAATGTTGGGAGAAATGTTGACTTTACCCCAAAAT
TTCGGGAATATATTTTTGGGAGAGACCTTTTCCAGTTATATCAGTGTTCACAATGACAGCAATCAAGTTG
TAAAAGATATATTGGTGAAGGCGGATCTGCAGACGAGTTCTCAGCGTTTAAACCTTTCAGCCTCCAATGC
TGCTGTGGCTGAACTTAAACCCGACTGCTGTATTGATGACGTCATACACCATGAAGTAAAGGAAATTGGG
ACTCACATCTTGGTGTGTGCTGTGAGTTACACAACGCAGGGTGGAGAAAAAATGTACTTTAGGAAATTCT
TCAAATTTCAGGTTCTCAAACCATTGGATGTGAAAACCAAATTTTACAATGCAGAGAGTGACCTCAGTTC
TGTGACTGATGAAGTATTTCTTGAAGCACAAATTCAGAATATTACAACCTCACCAATGTTTATGGAGAAA
GTTTCACTAGAGCCATCAATAATGTACAATGTAACAGAATTAAACTCGGTGACCCAGGCTGGAGAATGCA
TATCTACATTTGGGTCCAGAGGATATTTGCAGCCAATGGATACACGCCAATACTTATACTGCCTAAAGCC
CAAGAAGGAATTTGCAGAAAAAGCCGGCATAATTAAGGGAGTGACAGTAATTGGGAAACTGGATATAGTG
TGGAAAACAAATCTAGGTGAAAGGGGACGGTTACAGACCAGCCAGCTTCAAAGGATGGCTCCAGGTTATG
GGGATGTTAGGCTGTCTTTAGAGGCCATCCCAGACACTGTAAACCTAGAAGAACCTTTCCATATTACCTG
TAAAATCACAAACTGCAGTGAGAGGATGATGGACCTCGTGCTGGAGATGTGCAACACCAATTCCATCCAC
TGGTGTGGGATCTCAGGACGACAGCTGGGGAAACTGCACCCCAGCTCCTCGCTCTGCCTGGCCCTGACGC
TCCTGTCCTCAGTACAGGGGCTCCAAAGTGTCTCTGGCTTAAGACTCACTGACACATTTCTAAAGAGAAC
ATACGAATATGATGACATCGCGCAAGTCTGCGTAGTCTCAGCAGCCGTGGAAGTGGAAGCCTAA

Translation (417 aa):
MEVNPPKQEHLLALKVMRLTKPTLFTNIPVTCEEKDLPGDLFNQLMKDDPSTVNGAEILMLGEMLTLPQN
FGNIFLGETFSSYISVHNDSNQVVKDILVKADLQTSSQRLNLSASNAAVAELKPDCCIDDVIHHEVKEIG
THILVCAVSYTTQGGEKMYFRKFFKFQVLKPLDVKTKFYNAESDLSSVTDEVFLEAQIQNITTSPMFMEK
VSLEPSIMYNVTELNSVTQAGECISTFGSRGYLQPMDTRQYLYCLKPKKEFAEKAGIIKGVTVIGKLDIV
WKTNLGERGRLQTSQLQRMAPGYGDVRLSLEAIPDTVNLEEPFHITCKITNCSERMMDLVLEMCNTNSIH
WCGISGRQLGKLHPSSSLCLALTLLSSVQGLQSVSGLRLTDTFLKRTYEYDDIAQVCVVSAAVEVEA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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