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Report for CCDS35925.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35925.1 Public Mus musculus 10 Lrrtm3 23 108 98 CCDS HistoryNCBI Gene:216028Re-query CCDS DB by CCDS ID:35925.1Re-query CCDS DB by GeneID:216028See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 35925.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000105439.1 ENSMUSP00000101079.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000105439.1Link to Ensembl Protein Viewer:ENSMUSP00000101079.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000105439Re-query CCDS DB by Protein ID:ENSMUSP00000101079
Original member Current member NCBI NM_178678.4 NP_848793.1 Accepted alive Link to Nucleotide Sequence:NM_178678.4Link to Protein Sequence:NP_848793.1Re-query CCDS DB by Nucleotide ID:NM_178678Re-query CCDS DB by Protein ID:NP_848793Link to BLAST:NP_848793.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_848793.1 582 Q8BZ81-1 582 100% 0 0

Chromosomal Locations for CCDS 35925.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 63930058 63930267 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 64087848 64089382 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 64089710 64089713 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1749 nt):
ATGGGTTTCAATGTAATTAGGCTACTGCGAGGATCAGCTGTAGCGGTGGTTCTAGCACCCACTGTCTTAC
TGACAATGCTTTCTTCTGCTGAACGAGGATGCCCTAAGGGTTGTAGGTGTGAAGGCAAAATGGTATACTG
TGAGTCTCAGAAACTGCAGGAGATACCCTCGAGTATATCTGCCGGTTGCTTGGGTTTATCCCTTCGCTAC
AACAGCCTCCAAAAACTTAAGTATAATCAATTTAAAGGGCTCAATCAGCTCACCTGGCTCTACCTTGACC
ACAACCACATCAGCAATATCGACGAGAATGCTTTCAATGGGATACGCAGACTCAAAGAGTTGATTCTGAG
TTCCAACAGAATCTCCTATTTCCTTAACAACACCTTCAGACCTGTGACCAATTTACGGAACTTGGATCTG
TCCTACAATCAGCTCCATTCTCTGGGATCGGAACAGTTCCGGGGCTTGAGGAAGCTGCTTAGTTTACACC
TCCGCTCCAACTCACTGAGAACCATCCCGGTGCGGATCTTCCAAGACTGTCGCAACCTGGAACTTCTGGA
CCTGGGATACAACCGGATCCGAAGTTTAGCCAGGAATGTCTTTGCTGGCATGATCAGACTCAAAGAGCTT
CACCTGGAGCACAATCAATTTTCCAAGCTCAACCTGGCCCTGTTCCCAAGGCTGGTGAGCCTTCAGAACT
TGTACATGCAGTGGAATAAAATCAGTGTCATAGGGCAAACCATGTCCTGGACCTGGAGTTCCTTACAGAG
GCTCGACCTGTCTGGTAATGAGATCGAAGCCTTCAGCGGACCCAGTGTCTTCCAGTGTGTTCCCAATCTG
CAACGCCTCAACCTGGATTCCAACAAGCTCACATTTATTGGACAAGAGATTCTGGATTCTTGGATCTCTC
TCAATGACATCAGTCTGGCTGGGAATATATGGGAATGCAGCAGGAATATCTGTTCCCTGGTAAACTGGCT
GAGAAGTTTTAAAGGTCTGAGAGAGAATACAATCATCTGCGCCAGTCCCAAAGAGCTGCAGGGGGTTAAC
GTGATCGATGCGGTGAAGAACTACAGCATCTGTGGGAAGAGCACTACCACAGAGAGGTTTGACCTGGCCA
GGGCCCTCCCCAAGCCCACATTTAAGCCCAAGCTCCCCAGGCCGAAGCACGAGAGCAAGCCTCCTCTGCC
CCCCACGGTGGGAGCTACCGAGCCCAGCCCAGAGACAGATGTGGACACGGAGCACATCTCCTTCCATAAG
ATCATCGCGGGCAGCGTGGCCCTTTTCCTGTCGGTGCTGGTCATCCTCCTGGTGATGTACGTGTCCTGGA
AGCGGTACCCCGCGAGCATGAAGCAGCTGCAGCAGCGCTCCCTCATGCGAAGGCACCGGAAGAAGAAACG
GCAATCGCTCAAGCAGATGACTCCAGGCACCCAGGAATTTTATGTAGATTATAAACCCACCAACACGGAG
ACCAGCGAGATGCTGCTGAACGGAACGGGACCCTGCACCTATAGCAAATCAGGCTCCAGGGAATGTGAGA
TACCTTTATCAATGAATGTGTCAACCTTTCTGGCATATGACCAGCCCACAATAAGTTACTGTGGGGTCCA
TCATGAACTCCTCTCCCATAAGTCCTTTGAAACGAATGCACAGGAAGACACGATGGAAAGCCACCTAGAG
ACTGAGCTGGACTTGAGCACAATCACGTCAGCTGGCCGCATCAGTGACCATAAACCACAGCTGGCCTGA

Translation (582 aa):
MGFNVIRLLRGSAVAVVLAPTVLLTMLSSAERGCPKGCRCEGKMVYCESQKLQEIPSSISAGCLGLSLRY
NSLQKLKYNQFKGLNQLTWLYLDHNHISNIDENAFNGIRRLKELILSSNRISYFLNNTFRPVTNLRNLDL
SYNQLHSLGSEQFRGLRKLLSLHLRSNSLRTIPVRIFQDCRNLELLDLGYNRIRSLARNVFAGMIRLKEL
HLEHNQFSKLNLALFPRLVSLQNLYMQWNKISVIGQTMSWTWSSLQRLDLSGNEIEAFSGPSVFQCVPNL
QRLNLDSNKLTFIGQEILDSWISLNDISLAGNIWECSRNICSLVNWLRSFKGLRENTIICASPKELQGVN
VIDAVKNYSICGKSTTTERFDLARALPKPTFKPKLPRPKHESKPPLPPTVGATEPSPETDVDTEHISFHK
IIAGSVALFLSVLVILLVMYVSWKRYPASMKQLQQRSLMRRHRKKKRQSLKQMTPGTQEFYVDYKPTNTE
TSEMLLNGTGPCTYSKSGSRECEIPLSMNVSTFLAYDQPTISYCGVHHELLSHKSFETNAQEDTMESHLE
TELDLSTITSAGRISDHKPQLA


Links Key
 Links to:   History report
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  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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