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Report for CCDS48343.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48343.1 Public Mus musculus 1 Steap3 23 108 98 CCDS HistoryNCBI Gene:68428Re-query CCDS DB by CCDS ID:48343.1Re-query CCDS DB by GeneID:68428See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48343.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000112639.7 ENSMUSP00000108258.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000112639.7Link to Ensembl Protein Viewer:ENSMUSP00000108258.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000112639Re-query CCDS DB by Protein ID:ENSMUSP00000108258
Original member Current member EBI ENSMUST00000112640.7 ENSMUSP00000108259.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000112640.7Link to Ensembl Protein Viewer:ENSMUSP00000108259.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000112640Re-query CCDS DB by Protein ID:ENSMUSP00000108259
Original member Current member EBI ENSMUST00000112641.7 ENSMUSP00000108260.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000112641.7Link to Ensembl Protein Viewer:ENSMUSP00000108260.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000112641Re-query CCDS DB by Protein ID:ENSMUSP00000108260
Original member NCBI NM_001085409.1 NP_001078878.1 Updated not alive Link to Nucleotide Sequence:NM_001085409.1Link to Protein Sequence:NP_001078878.1Re-query CCDS DB by Nucleotide ID:NM_001085409Re-query CCDS DB by Protein ID:NP_001078878
Current member NCBI NM_001085409.2 NP_001078878.1 Accepted alive Link to Nucleotide Sequence:NM_001085409.2Link to Protein Sequence:NP_001078878.1Re-query CCDS DB by Nucleotide ID:NM_001085409Re-query CCDS DB by Protein ID:NP_001078878Link to BLAST:NP_001078878.1
Original member NCBI NM_133186.3 NP_573449.2 Updated not alive Link to Nucleotide Sequence:NM_133186.3Link to Protein Sequence:NP_573449.2Re-query CCDS DB by Nucleotide ID:NM_133186Re-query CCDS DB by Protein ID:NP_573449
Current member NCBI NM_133186.4 NP_573449.2 Accepted alive Link to Nucleotide Sequence:NM_133186.4Link to Protein Sequence:NP_573449.2Re-query CCDS DB by Nucleotide ID:NM_133186Re-query CCDS DB by Protein ID:NP_573449Link to BLAST:NP_573449.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001078878.1 488 Q8CI59-1 488 99.5902% 0 2
NP_573449.2 488 Q8CI59-1 488 99.5902% 0 2

Chromosomal Locations for CCDS 48343.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 120227647 120227928 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 120234242 120234406 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 120241432 120241959 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 120243768 120244259 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1467 nt):
ATGTCGGGGGAGATGGACAAGCCGCTGATCAGCCGCCGCCTAGTGGACAGTGATGGCAGTCTGGCTGAGG
TCCCCAAGGAGGCCCCCAAAGTGGGCATCCTGGGCAGTGGGGATTTTGCCCGTTCCCTGGCCACACGCCT
GGTGGGCTCTGGCTTCAGTGTGGTGGTGGGGAGCCGTAACCCCAAACGCACGGCTGGCCTCTTCCCCTCC
TTAGCTCAAGTGACTTTCCAGGAGGAAGCCGTGAGCTCTCCAGAGGTCATCTTTGTGGCCGTGTTCCGGG
AGCACTATTCCTCACTGTGCAGTCTCGCTGACCAGTTGGCTGGCAAGATCCTCGTGGATGTAAGCAACCC
CACGGAGAAGGAGCATCTTCAGCACCGCCAGTCTAACGCTGAGTACCTGGCCTCACTCTTTCCTGCGTGC
ACTGTGGTGAAGGCCTTCAACGTCATCTCTGCATGGGCCCTACAGGCTGGCCCAAGGGATGGGAACAGGC
AGGTGCTCATCTGCAGTGATCAGCCAGAAGCCAAGCGCACCATCTCAGAGATGGCACGCGCCATGGGTTT
CACACCCCTGGACATGGGATCCCTGGCCTCAGCGAGGGAGGTAGAAGCCATACCCCTGCGCCTCCTTCCA
TCCTGGAAGGTGCCCACCCTCCTGGCACTGGGGCTCTTTGTGTGCTTCTACACCTACAACTTCATCCGAG
ACGTTCTACAGCCATACATTCGGAAAGATGAGAACAAGTTCTACAAGATGCCCTTGTCTGTGGTCAACAC
CACACTACCCTGTGTGGCTTATGTGCTGCTGTCCCTAGTGTACCTGCCCGGTGTGCTGGCAGCTGCGCTT
CAGCTGCGGAGGGGGACCAAGTACCAGCGCTTCCCAGACTGGCTGGACCACTGGCTGCAGCATCGCAAGC
AGATCGGGCTGCTCAGCTTCTTCTTCGCGATGCTGCACGCTCTCTACAGCTTCTGCCTGCCGCTGCGCCG
CTCCCACCGCTACGACCTGGTCAATCTGGCTGTGAAGCAGGTCCTGGCCAACAAGAGCCGCCTCTGGGCT
GAGGAAGAAGTCTGGAGGATGGAGATATACCTGTCCCTGGGTGTGCTGGCCCTGGGCATGTTGTCGCTGC
TGGCTGTCACCTCGCTCCCGTCCATTGCTAATTCCCTCAACTGGAAGGAGTTCAGCTTCGTGCAGTCCAC
ACTGGGCTTCGTGGCCCTGATACTCAGCACAATGCACACACTCACCTACGGCTGGACCCGTGCCTTTGAG
GAAAACCACTACAAGTTCTACCTGCCGCCCACATTCACACTCACGCTGCTCCTGCCCTGTGTGATCATCC
TGGCCAAGGGCCTCTTCCTCCTGCCCTGCCTCAACCGCAGACTCACCAAGATACGCAGGGGCTGGGAGAA
AGATGGGGCTGTCAAGTTCATGCTGCCCGGCGACCACACACAGGGGGAGAAAACAAGCCACGTGTGA

Translation (488 aa):
MSGEMDKPLISRRLVDSDGSLAEVPKEAPKVGILGSGDFARSLATRLVGSGFSVVVGSRNPKRTAGLFPS
LAQVTFQEEAVSSPEVIFVAVFREHYSSLCSLADQLAGKILVDVSNPTEKEHLQHRQSNAEYLASLFPAC
TVVKAFNVISAWALQAGPRDGNRQVLICSDQPEAKRTISEMARAMGFTPLDMGSLASAREVEAIPLRLLP
SWKVPTLLALGLFVCFYTYNFIRDVLQPYIRKDENKFYKMPLSVVNTTLPCVAYVLLSLVYLPGVLAAAL
QLRRGTKYQRFPDWLDHWLQHRKQIGLLSFFFAMLHALYSFCLPLRRSHRYDLVNLAVKQVLANKSRLWA
EEEVWRMEIYLSLGVLALGMLSLLAVTSLPSIANSLNWKEFSFVQSTLGFVALILSTMHTLTYGWTRAFE
ENHYKFYLPPTFTLTLLLPCVIILAKGLFLLPCLNRRLTKIRRGWEKDGAVKFMLPGDHTQGEKTSHV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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