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Report for CCDS30248.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30248.1 Public Mus musculus X Prkx 23 108 98 CCDS HistoryNCBI Gene:19108Re-query CCDS DB by CCDS ID:30248.1Re-query CCDS DB by GeneID:19108See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30248.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000036333.13 ENSMUSP00000045304.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000036333.13Link to Ensembl Protein Viewer:ENSMUSP00000045304.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000036333Re-query CCDS DB by Protein ID:ENSMUSP00000045304
Original member Current member NCBI NM_016979.2 NP_058675.1 Accepted alive Link to Nucleotide Sequence:NM_016979.2Link to Protein Sequence:NP_058675.1Re-query CCDS DB by Nucleotide ID:NM_016979Re-query CCDS DB by Protein ID:NP_058675Link to BLAST:NP_058675.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_058675.1 355 Q922R0 355 100% 0 0

Chromosomal Locations for CCDS 30248.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 77764129 77764254 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 77764573 77764650 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 77765349 77765406 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 77771247 77771342 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 77773116 77773235 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 77782038 77782301 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 77786128 77786296 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 77795548 77795704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1068 nt):
ATGGAGCCGCCCGCTGGTGCCGCGGCGACCGTAAAAGATCCAGACCATGACCCCGTGAAGACCAAGGTCT
CGGCGCCCGCCGCGGACCCCAAACCCAGGACATCGTCACAGAAGGCGGGGCACTCGTTACAAGATTGGGA
CACCATAGCCACCGTGGGCACTGGGACCTTTGGCCGTGTAAACCTGGTGAAGGAGAAGACAGGCAGGCAA
TACTGTGCCTTGAAGATTATGAGTATCCCAGATGTCATCCGCCTGAAACAGGAACAGCATGTGCAGAATG
AGAAAGCAGTCCTGAAGGAAATAAACCATCCCTTCCTCATTAAACTGCTTTGGACAGGCCATGACAACCG
CTTCCTATACATGTTGATGGAGTTCGTGCCTGGTGGTGAGCTCTTCACCTACCTGCGTAATCGTGGCCGA
TTCTCCTCAGTTGCTTCAGTCTTCTACGCCACAGAGATTGTGTGTGCCATAGAATATCTACACTCAAAGG
AAATCGTATACAGGGACCTGAAGCCTGAAAACATCCTTCTAGACAGGGAAGGACATATTAAACTGACAGA
CTTCGGCTTCGCCAAGAAACTGGTGGATAGGACATGGACTCTCTGTGGGACACCAGAATATCTCGCCCCA
GAAGTCATTCAGAGCAAAGGTCATGGAAGGGCTGTGGACTGGTGGGCACTGGGCATTCTTATATTCGAGA
TGCTGTCTGGGTTTCCCCCATTTTTCGATGACAACCCGTTTGGGATTTACCAGAAAATCCTTGCATGCAA
AATAGATTTCCCCAGACAATTGGATTTCACCTCTAAGGACCTCATCAAGAAGCTGCTGGTGGTGGACAGG
ACCCGACGCCTAGGCAACATGAAGAATGGGGCAGAAGACATCAAGCGGCACCGGTGGTTCCGAGGTGTGG
AGTGGGAATCTGTGCCACAAAGAAAACTGAAGCCACCCATTGTGCCCAAGTTATCGGGTGATGGTGACAT
CTCCAACTTTGAGACTTATCCAGAGAGTGAATTGGACAAGACACCTTCTGTATCTGACAAAGACCTGGAA
ACATTCAAAAATTTCTGA

Translation (355 aa):
MEPPAGAAATVKDPDHDPVKTKVSAPAADPKPRTSSQKAGHSLQDWDTIATVGTGTFGRVNLVKEKTGRQ
YCALKIMSIPDVIRLKQEQHVQNEKAVLKEINHPFLIKLLWTGHDNRFLYMLMEFVPGGELFTYLRNRGR
FSSVASVFYATEIVCAIEYLHSKEIVYRDLKPENILLDREGHIKLTDFGFAKKLVDRTWTLCGTPEYLAP
EVIQSKGHGRAVDWWALGILIFEMLSGFPPFFDDNPFGIYQKILACKIDFPRQLDFTSKDLIKKLLVVDR
TRRLGNMKNGAEDIKRHRWFRGVEWESVPQRKLKPPIVPKLSGDGDISNFETYPESELDKTPSVSDKDLE
TFKNF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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