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Report for CCDS87960.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
87960.1 Public Mus musculus 10 Plagl1 23 108 98 CCDS HistoryNCBI Gene:22634Re-query CCDS DB by CCDS ID:87960.1Re-query CCDS DB by GeneID:22634See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 87960.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000121325.7 ENSMUSP00000112889.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000121325.7Link to Ensembl Protein Viewer:ENSMUSP00000112889.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000121325Re-query CCDS DB by Protein ID:ENSMUSP00000112889
Original member Current member EBI ENSMUST00000121766.7 ENSMUSP00000113710.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000121766.7Link to Ensembl Protein Viewer:ENSMUSP00000113710.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000121766Re-query CCDS DB by Protein ID:ENSMUSP00000113710
Original member Current member NCBI NM_001364643.1 NP_001351572.1 Accepted alive Link to Nucleotide Sequence:NM_001364643.1Link to Protein Sequence:NP_001351572.1Re-query CCDS DB by Nucleotide ID:NM_001364643Re-query CCDS DB by Protein ID:NP_001351572Link to BLAST:NP_001351572.1
Original member Current member NCBI NM_001364644.1 NP_001351573.1 Accepted alive Link to Nucleotide Sequence:NM_001364644.1Link to Protein Sequence:NP_001351573.1Re-query CCDS DB by Nucleotide ID:NM_001364644Re-query CCDS DB by Protein ID:NP_001351573Link to BLAST:NP_001351573.1
Original member Current member NCBI NM_001364645.1 NP_001351574.1 Accepted alive Link to Nucleotide Sequence:NM_001364645.1Link to Protein Sequence:NP_001351574.1Re-query CCDS DB by Nucleotide ID:NM_001364645Re-query CCDS DB by Protein ID:NP_001351574Link to BLAST:NP_001351574.1

Chromosomal Locations for CCDS 87960.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 13125017 13125168 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 13127142 13128996 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 13129626 13129655 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2037 nt):
ATGGCTCCATTCCGCTGTCAAAAATGTGGCAAGTCCTTCGTCACCCTGGAGAAGTTCACCATTCACAATT
ATTCCCACTCCAGGGAGCGCCCATTCAAGTGCTCGAAGGCTGAGTGTGGCAAAGCCTTCGTCTCCAAGTA
TAAGCTGATGAGACACATGGCCACACACTCGCCACAGAAGATTCACCAGTGTACTCACTGTGAGAAGACA
TTCAACCGGAAGGACCACCTGAAGAACCACCTCCAGACCCACGATCCCAACAAGATCTCCTACGCGTGTG
ACGATTGCGGCAAGAAGTACCACACCATGCTGGGCTACAAGAGGCACCTGGCCCTGCACTCGGCGAGCAA
TGGCGATCTCACCTGTGGGGTGTGCACCCTGGAGCTGGGGAGCACCGAGGTCCTGCTGGACCACCTCAAG
TCTCACGCGGAAGAAAAGGCCAACCAGGCACCCAGGGAGAAGAAATACCAGTGCGACCACTGTGATAGAT
GCTTCTACACCCGGAAAGATGTGCGTCGCCACCTGGTGGTCCACACAGGATGCAAGGACTTCCTGTGTCA
GTTCTGTGCCCAGAGATTTGGGCGCAAAGACCACCTCACTCGTCACACCAAGAAGACCCACTCCCAGGAG
CTGATGCAAGAGAATATGCAGGCAGGAGATTACCAGAGCAATTTCCAACTCATTGCGCCTTCAACTTCGT
TCCAGATAAAGGTTGATCCCATGCCTCCTTTCCAGCTAGGAGCGGCTCCCGAGAACGGGCTTGATGGTGG
CTTGCCACCCGAGGTTCATGGTCTAGTGCTTGCTGCCCCAGAAGAAGCTCCCCAACCCATGCCGCCCTTG
GAGCCTTTGGAGCCTTTGGAGCCTTTGGAGCCTTTGGAGCCGATGCAGTCTTTGGAGCCTTTGCAGCCTT
TGGAGCCGATGCAGCCTTTGGAGCCAATGCAGCCTTTGGAGCCGATGCAGCCTTTAGAGCCTTTGGAGCC
TCTGGAGCCGATGCAGCCTTTGGAGCCGATGCAGCCTTTGGAGCCTATGCAGCCAATGCTGCCAATGCAG
CCAATGCAGCCAATGCAGCCAATGCAGCCAATGCTGCCAATGCAGCCAATGCTGCCAATGCAGCCAATGC
AGCCAATGCAGCCAATGCTGCCAATGCCAGAGCCGTCTTTCACTCTGCACCCTGGCGTAGTTCCCACCTC
TCCTCCCCCAATTATTCTTCAGGAGCATAAGTATAATCCTGTTCCTACCTCATATGCCCCATTTGTAGGC
ATGCCCGTCAAAGCAGATGGCAAGGCCTTTTGCAACGTGGGTTTCTTTGAGGAATTTCCTCTGCAAGAGC
CTCAGGCGCCTCTCAAGTTCAACCCATGTTTTGAGATGCCTATGGAGGGGTTTGGGAAAGTCACCCTGTC
CAAAGAGCTGCTGGTAGATGCTGTGAATATAGCCATTCCTGCCTCTCTGGAGATTTCCTCCCTATTGGGG
TTTTGGCAGCTCCCCCCTCCTACTCCCCAGAATGGCTTTGTGAATAGCACCATCCCTGTGGGGCCTGGGG
AGCCACTGCCCCATAGGATAACCTGTCTGGCGCAGCAGCAGCCACCGCCACTGCCGCCGCCACCACCGCT
GCCACTGCCACAGCCACTGCCAGTGCCACAGCCACTACCACAGCCACAGATGCAGCCACAGTTTCAGTTG
CAGATCCAGCCCCAGATGCAGCCCCAGATGCAGCTGCAGCCACTGCAGCTGCAGCTACCACAGCTGCTGC
CGCAACTGCAACCTCAGCAGCAGCCTGATCCTGAGCCAGAGCCAGAGCCAGAGCCAGAGCCAGAGCCAGA
GCCAGAGCCGGAACCGGAACCGGAGCCAGAGCCAGAGCCAGAACCAGAGCCAGAGGAAGAACAGGAAGAG
GCAGAAGAAGAGGCAGAGGAAGGAGCAGAGGAAGGAGCAGAACCAGAGGCACAGGCAGAAGAAGAGGAAG
AGGAAGAGGAAGCGGAAGAGCCACAGCCAGAAGAAGCCCAAATAGCAGGACTCGTCTATAAGAAATGGAC
AGTTTAG

Translation (678 aa):
MAPFRCQKCGKSFVTLEKFTIHNYSHSRERPFKCSKAECGKAFVSKYKLMRHMATHSPQKIHQCTHCEKT
FNRKDHLKNHLQTHDPNKISYACDDCGKKYHTMLGYKRHLALHSASNGDLTCGVCTLELGSTEVLLDHLK
SHAEEKANQAPREKKYQCDHCDRCFYTRKDVRRHLVVHTGCKDFLCQFCAQRFGRKDHLTRHTKKTHSQE
LMQENMQAGDYQSNFQLIAPSTSFQIKVDPMPPFQLGAAPENGLDGGLPPEVHGLVLAAPEEAPQPMPPL
EPLEPLEPLEPLEPMQSLEPLQPLEPMQPLEPMQPLEPMQPLEPLEPLEPMQPLEPMQPLEPMQPMLPMQ
PMQPMQPMQPMLPMQPMLPMQPMQPMQPMLPMPEPSFTLHPGVVPTSPPPIILQEHKYNPVPTSYAPFVG
MPVKADGKAFCNVGFFEEFPLQEPQAPLKFNPCFEMPMEGFGKVTLSKELLVDAVNIAIPASLEISSLLG
FWQLPPPTPQNGFVNSTIPVGPGEPLPHRITCLAQQQPPPLPPPPPLPLPQPLPVPQPLPQPQMQPQFQL
QIQPQMQPQMQLQPLQLQLPQLLPQLQPQQQPDPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEEEQEE
AEEEAEEGAEEGAEPEAQAEEEEEEEEAEEPQPEEAQIAGLVYKKWTV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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