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Report for CCDS28001.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28001.1 Public Mus musculus 16 Snap29 23 108 98 CCDS HistoryNCBI Gene:67474Re-query CCDS DB by CCDS ID:28001.1Re-query CCDS DB by GeneID:67474See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28001.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000023449.10 ENSMUSP00000023449.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000023449.10Link to Ensembl Protein Viewer:ENSMUSP00000023449.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000023449Re-query CCDS DB by Protein ID:ENSMUSP00000023449
Original member Current member NCBI NM_023348.4 NP_075837.3 Accepted alive Link to Nucleotide Sequence:NM_023348.4Link to Protein Sequence:NP_075837.3Re-query CCDS DB by Nucleotide ID:NM_023348Re-query CCDS DB by Protein ID:NP_075837Link to BLAST:NP_075837.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_075837.3 260 Q9ERB0 260 100% 0 0

Chromosomal Locations for CCDS 28001.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 17406123 17406359 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 17419264 17419460 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 17422466 17422551 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 17427037 17427141 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 17428143 17428300 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (783 nt):
ATGTCTGGCTATCCTAAAAGCTATAATCCTTTCGACGATGACGTGGAAGAGGAAGACACCCGGCCCGCGC
CGTGGAAGGACGTCCGCGACCTGCCTGACGGCCCCGACGCGCCCATTGACAGGCAGCAGTACCTGAGACA
GGAGGTGTTGCGCAGGGCCGAGGCTACCGCTGCCAGTACCAGCAGGTCCTTGTCTCTCATGTATGAATCG
GAGAAGATCGGAGTCGCCTCTTCCGAGGAGCTGGTCCGGCAGCGAGGAGTCCTAGAACACACAGAGAAGA
TGGTAGACAAGATGGATCAGGATTTGAAGATGAGCCAGAAACATATCAACAGCATTAAGAGTGTGTTTGG
AGGATTTATCAACTACTTCAAATCCAAACCAGTAGAGCCTCCACCTGAGCAGAATGGCAGCATCGTCTCC
CAGCCCAACAGCAGATTGAAAGAAGCCATAAATACAAGTAAAGACCAGGAAAACAAGTACCAAGCCAGCC
ACCCAAACCTCAGAAGGCTACAGGATGCAGAACTAGACTCGGTCCCCAAAGAACCTTCTTCTACTGTGAA
TACTGAGGTTTACCCAAAGAACTCGACCCTTCGAACTTATCACCAGAAGATTGACAGCAACCTAGATGAG
CTGTCCGTGGGATTAGGCCACCTGAAGGACATAGCCTTGGGAATGCAGACAGAAATTGAGGAACAGGATG
ACATCCTTGACCGACTGACAACCAAAGTGGACAAGCTAGATGTCAATATAAAAAGCACAGAAAAAAAAGT
GCGGCAACTCTAG

Translation (260 aa):
MSGYPKSYNPFDDDVEEEDTRPAPWKDVRDLPDGPDAPIDRQQYLRQEVLRRAEATAASTSRSLSLMYES
EKIGVASSEELVRQRGVLEHTEKMVDKMDQDLKMSQKHINSIKSVFGGFINYFKSKPVEPPPEQNGSIVS
QPNSRLKEAINTSKDQENKYQASHPNLRRLQDAELDSVPKEPSSTVNTEVYPKNSTLRTYHQKIDSNLDE
LSVGLGHLKDIALGMQTEIEEQDDILDRLTTKVDKLDVNIKSTEKKVRQL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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