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Report for CCDS24831.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24831.1 Public Mus musculus 11 Zfp286 23 108 98 CCDS HistoryNCBI Gene:192651Re-query CCDS DB by CCDS ID:24831.1Re-query CCDS DB by GeneID:192651See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24831.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000054654.12 ENSMUSP00000055517.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000054654.12Link to Ensembl Protein Viewer:ENSMUSP00000055517.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000054654Re-query CCDS DB by Protein ID:ENSMUSP00000055517
Original member Current member NCBI NM_138949.4 NP_620399.3 Accepted alive Link to Nucleotide Sequence:NM_138949.4Link to Protein Sequence:NP_620399.3Re-query CCDS DB by Nucleotide ID:NM_138949Re-query CCDS DB by Protein ID:NP_620399Link to BLAST:NP_620399.3

Chromosomal Locations for CCDS 24831.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 62779686 62780899 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 62783672 62783761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 62784879 62784993 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 62787959 62788044 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 62788930 62788984 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1560 nt):
ATGGAAGAGGTGGTGATCATGGAGACGGGTTTGGCCGAAGTGCCTCAGAAAAGAGCTCTGTCTTCCCCGG
ATTCTCTCCTTTCCCACGAGAAGAGTGCAGAAGGAGACGTGGCTGCTCTGAGACTCACTGTCAGATCCCA
GGAAGCCATGACATTCAAGGATGTGGCCATGGACTTTACGCCAGAGGAGTGGGGGAAGCTGGATCCTGCA
CACAGGGCCGTGATGCTGGAGAACTACAGGAACCTGGTCTCGCTCTGGCTTCCCATTTCCAAACCCGATA
ACTATAATTCGGAAGATGGAAAAGAACTGTCGAAGCTTGAGAAGTCTCCCAAGTGCAGTGACTCAGACAT
GGAAACCAGACCTGAGAGCAAGGAGTCAACTTCAGTGCTAGACTTTTCCAAAGAAGAGTCAAACAGACTG
ACAGAAAATACTGCTTCTGACTCCGACATTGAAACTGCTCTTGAATGTGAGCGTTGGCTAGAACATCGTC
AAAGAAATCGGGAGAGGTACCCAAGACAAATGTCTGCTCACAGGAACTCCCTCCCTGCGCAAGAAGATGG
TGAACGTGATGTATATTGGAAAAGCTTCAGTCAGAAACCTCTCCTTACAACTGATGACAGAGACCCCAAA
GGATCCTGGGACGTTCACACGCTTGGGAAAAGACTGAAGCAGAAATCAAAGTTAATGACAAAGCAGAGAC
CTTATAAAGAGAAAAAACCTCATAAGTGTGATGAGTGTGGCGAACTCTTCACTTACCGTTCGGTACTTAT
CCGACACCAGAGAGTTCACACTGGAGAGAAACCTTATACCTGCAGTGAGTGCGGGAAGTCCTTCAGCCAC
AGAGCCAATCTGACTAAGCACCAGAGAACCCACACTAGGATTCTCTTCGAGTGTGGCGAGTGCAAGAAAA
CCTTCATAGAAAGTTCATCCCTTGAGGTACATCAGAGAATCCACATCGGGGAGAGACCTTACGAATGCGC
CGAGTGTGGGAAAGGCTTCAACCGAAGTACACACCTTGCCCAGCATCAGCTGATTCATACTGGGGTGAAG
CCTTATGAATGTAACGAATGTGACAAAGCTTTCATTCACTCATCAGCTCTCATTAAGCATCAAAGAACTC
ATACTGGAGAGAAGCCCTATAAATGTCAAGACTGTGGGAAAGCCTTCAGCCACTGCTCATCTCTTACGAA
GCACCAGAGGGTTCACACGGGGGAAAGGCCATATGAGTGCAGTGAGTGTGGGAAGACTTTCAGTCAGAGC
ACGCACCTTGTTCAGCACCAGAGAATCCACACTGGAGAAAAGCCCTACGAATGTAACGAATGTGGGAAAA
CATTCAGCCGGAGCTCAAATTTTGCAAAGCATCAAAGAATTCACATGGGAAAGAAACCCTATAAATGTGG
AGAATGTGGCAAAGCCTTCGTTCATTCGTCAGCTCTTATTCAACACCAGAGAACTCACACTGGGGAGAAG
CCTTTCAGGTGTACCGAGTGTGGGAAAAGCTTCAAGAGCAGCCCCTCCCTCATCCGACATCAAAGAACTC
ACACTGAAGAGCAGCCCTGA

Translation (519 aa):
MEEVVIMETGLAEVPQKRALSSPDSLLSHEKSAEGDVAALRLTVRSQEAMTFKDVAMDFTPEEWGKLDPA
HRAVMLENYRNLVSLWLPISKPDNYNSEDGKELSKLEKSPKCSDSDMETRPESKESTSVLDFSKEESNRL
TENTASDSDIETALECERWLEHRQRNRERYPRQMSAHRNSLPAQEDGERDVYWKSFSQKPLLTTDDRDPK
GSWDVHTLGKRLKQKSKLMTKQRPYKEKKPHKCDECGELFTYRSVLIRHQRVHTGEKPYTCSECGKSFSH
RANLTKHQRTHTRILFECGECKKTFIESSSLEVHQRIHIGERPYECAECGKGFNRSTHLAQHQLIHTGVK
PYECNECDKAFIHSSALIKHQRTHTGEKPYKCQDCGKAFSHCSSLTKHQRVHTGERPYECSECGKTFSQS
THLVQHQRIHTGEKPYECNECGKTFSRSSNFAKHQRIHMGKKPYKCGECGKAFVHSSALIQHQRTHTGEK
PFRCTECGKSFKSSPSLIRHQRTHTEEQP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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