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Report for CCDS40150.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40150.1 Public Mus musculus 7 Itgax 23 108 98 CCDS HistoryNCBI Gene:16411Re-query CCDS DB by CCDS ID:40150.1Re-query CCDS DB by GeneID:16411See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40150.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000033053.7 ENSMUSP00000033053.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000033053.7Link to Ensembl Protein Viewer:ENSMUSP00000033053.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000033053Re-query CCDS DB by Protein ID:ENSMUSP00000033053
Original member Current member NCBI NM_021334.3 NP_067309.1 Accepted alive Link to Nucleotide Sequence:NM_021334.3Link to Protein Sequence:NP_067309.1Re-query CCDS DB by Nucleotide ID:NM_021334Re-query CCDS DB by Protein ID:NP_067309Link to BLAST:NP_067309.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_067309.1 1169 Q9QXH4 1169 100% 0 0

Chromosomal Locations for CCDS 40150.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 128129620 128129656 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 128130279 128130384 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 128130817 128130920 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 128131209 128131279 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 128131430 128131544 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 128133007 128133137 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 128133268 128133413 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 128133661 128133814 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 128134922 128135072 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 128135287 128135360 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 128135501 128135630 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 128135718 128135860 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 128136037 128136177 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 128136265 128136474 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 128139895 128140025 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 128140150 128140307 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 128140420 128140574 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 128141200 128141331 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 128141917 128141990 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 128142182 128142344 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 128144595 128144723 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 128144802 128144881 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 128144961 128145044 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 128147848 128147926 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 128148015 128148119 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 128148230 128148313 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 128148501 128148614 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 128148741 128148842 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 128149104 128149214 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 128150099 128150194 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3510 nt):
ATGAGCTGTACCTGGATAGCCTTTCTTCTGCTGTTGGGGTTTGTTTCTTGTCTTGGCTTCAACTTGGATG
CAGAGAAGCTGACACATTTTCACATGGACGGTGCTGAGTTCGGACACAGTGTGCTCCAGTATGATAGTTC
CTGGGTGGTGGTTGGAGCACCAAAGGAAATAAAAGCCACTAACCAAATAGGTGGCCTCTACAAATGTGGC
TATCACACAGGCAACTGTGAGCCCATCTCCCTCCAGGTGCCCCCAGAGGCTGTGAACATATCCCTGGGCC
TGTCCCTTGCTGCTGCCACCAACCCTTCCTGGCTGTTGGCTTGTGGTCCTACTGTGCACCACACATGCAG
AGAGAATATATACTTGACAGGGCTCTGCTTTCTACTGAGTTCATCATTCAAGCAGAGCCAGAACTTCCCA
ACTGCACAGCAGGAGTGTCCAAAGCAAGACCAAGACATCGTGTTCCTGATTGATGGCTCGGGTAGCATCA
GTTCCACAGATTTTGAAAAAATGCTGGACTTTGTTAAAGCTGTGATGAGCCAGCTTCAGAGACCTAGCAC
ACGGTTCTCCCTGATGCAGTTCTCTGATTACTTCCGAGTACATTTTACTTTCAACAACTTCATCTCCACG
TCAAGCCCTTTAAGTCTGTTGGGTTCTGTAAGGCAGCTAAGAGGGTACACATACACAGCCTCGGCTATCA
AGCATGTCATAACAGAACTGTTCACCACCCAAAGTGGAGCTCGGCAAGATGCCACCAAGGTCCTCATTGT
CATCACTGATGGGAGAAAACAAGGGGACAACTTGAGTTATGATAGTGTCATCCCCATGGCAGAGGCTGCA
AGCATCATTCGTTATGCAATTGGGGTAGGAAAGGCCTTTTACAATGAACATTCCAAGCAAGAATTAAAGG
CCATTGCATCGATGCCTTCCCATGAATACGTATTCAGCGTGGAGAACTTTGATGCTTTGAAGGATATTGA
GAATCAGCTGAAGGAGAAGATCTTTGCCATTGAGGGCACAGAGACACCAAGCAGCAGTACTTTTGAATTG
GAGATGTCCCAGGAGGGCTTCAGTGCTGTGTTTACACCTGATGGACCAGTTCTGGGGGCTGTGGGAAGCT
TCAGCTGGTCTGGAGGTGCCTTCTTGTACCCCTCAAATATGAGACCCACCTTCATCAACATGTCTCAGGA
GAACGAGGACATGAGGGACGCTTACCTGGGTTACTCCACCGCACTGGCCTTTTGGAAGGGGGTCCACAGC
CTGATCCTGGGGGCCCCTCGCCACCAGCACACGGGGAAGGTTGTCATCTTTACCCAGGAATCCAGGCACT
GGAGGCCCAAGTCTGAAGTCAGAGGGACACAGATCGGCTCCTACTTTGGGGCATCTCTTTGTTCTGTGGA
CATGGATAGAGATGGCAGCACTGACCTGGTCCTGATTGGAGTCCCCCATTACTATGAGCACACCCGAGGG
GGGCAGGTGTCAGTGTGCCCCATGCCCGGTGTGGGGAGCAGGTGGCATTGTGGGACCACCCTCCATGGGG
AGCAGGGCCATCCTTGGGGCCGCTTTGGGGCGGCTCTGACAGTGCTAGGGGACGTGAATGGGGACAGTCT
GGCAGATGTGGCTATTGGTGCACCCGGAGAGGAGGAGAACAGAGGTGCTGTCTACATATTTCATGGAGCC
TCAAGACAGGACATCGCTCCCTCACCCAGCCAGAGGATTTCAGCATCCCAGATCCCCTCCAGGATTCAAT
ATTTTGGGCAGTCACTGAGTGGGGGCCAGGACCTCACCCGGGATGGACTGGTGGATCTGGCCGTGGGCTC
CAAGGGACGCGTGCTGCTGCTCAGGACCAGACCAATTCTTAGAGTGTCACCAACTGTTCACTTCACACCT
GCAGAGATTTCCAGGTCTGTGTTTGAGTGTCAGGAGCAGGTGGCCCCTGAGCAGACACTGAGTGATGCCA
CTGTCTGCCTTCATATTCATGAAAGCCCCAAGACCCAACTAGGTGACCTCCGAAGTACTGTCACCTTTGA
CCTGGCTCTAGACCATGGCCGTCTGAGTACCCGGGCCATCTTCAAGGAGACAAAGACCCGGGCTCTGACT
CGAGTTAAAACTCTTGGTCTGAACAAGCACTGTGAAAGTGTGAAGTTGCTTCTCCCGGCCTGTGTGGAGG
ACTCAGTGACCCCGATCACTCTTCGCCTCAACTTTTCTCTTGTTGGTGTGCCCATCAGTTCCTTACAAAA
TCTCCAACCCATGCTGGCTGTAGATGACCAAACGTACTTCACGGCCTCTCTTCCCTTTGAGAAGAACTGT
GGAGCTGACCACATCTGCCAGGATGACCTTAGTGTCGTATTTGGCTTCCCAGACTTGAAGACCCTGGTGG
TGGGAAGTGACCTGGAGCTGAATGTAGATGTGACGGTGTCTAATGATGGAGAAGATTCCTACGGAACCAC
AGTCACTCTGTTCTACCCCGTGGGTCTGTCCTTTAGACGAGTTGCAGAAGGCCAAGTATTCCTTCGGAAG
AAAGAGGACCAGCAGTGGCAGCGGCGTGGGCAGCACTCCCTGCACCTCATGTGTGACAGCACCCCAGACA
GGAGTCAGGGCCTCTGGAGTACCAGCTGTAGCAGCAGACATGTCATTTTCCGTGGAGGCTCACAGATGAC
TTTTTTGGTAACTTTTGACGTCTCCCCCAAAGCTGAGCTGGGGGACCGGCTGCTTCTAAGAGCCAGAGTG
GGAAGTGAGAATAATGTACCCGGAACCCCAAAAACCACCTTCCAGTTGGAGCTTCCAGTAAAATATGCGG
TGTACACCATGATCAGCAGCCATGACCAGTTTACCAAGTATCTTAACTTCTCAACCTCAGAAAAGGAGAA
GACCAGTGTGGTCGAACATAGATTCCAGGTGAATAACCTGGGCCAGAGAGACGTGCCAGTCAGCATCAAC
TTTTGGGTGCCCATAGAGCTGAAGGGAGAAGCTGTGTGGACAGTGATGGTCTCCCACCCTCAGAACCCAC
TCACCCAATGCTATCGGAATAGACTCAAGCCAACACAATTTGACCTCCTGACTCACATGCAAAAGAGTCC
CGTGCTGGACTGCTCCATCGCTGACTGCCTGCACCTCCGCTGTGACATCCCCTCCTTGGGCATCCTGGAT
GAGCTTTACTTCATTCTGAAGGGCAACCTCAGCTTCGGCTGGATCAGTCAGACATTGCAGAAAAAGGTGT
TGCTCCTGAGTGAGGCTGAAATCACATTCAACACATCTGTGTATTCCCAGCTGCCGGGACAGGAGGCATT
TCTGAGAGCCCAGACGAAGACAGTGCTGGAGATGTATAAAGTTCACAACCCCGTCCCTCTTATCGTGGGC
AGCTCAGTGGGAGGTCTGCTGCTGCTGGCTATCATCACAGCTATACTTTACAAGGCTGGTTTCTTCAAAC
GTCAGTACAAGGAGATGTTGGAGGAAGCAAATGGACAGTTTGTCTCAGACGGGACCCCAACTCCCCAGGT
TGCCCAGTGA

Translation (1169 aa):
MSCTWIAFLLLLGFVSCLGFNLDAEKLTHFHMDGAEFGHSVLQYDSSWVVVGAPKEIKATNQIGGLYKCG
YHTGNCEPISLQVPPEAVNISLGLSLAAATNPSWLLACGPTVHHTCRENIYLTGLCFLLSSSFKQSQNFP
TAQQECPKQDQDIVFLIDGSGSISSTDFEKMLDFVKAVMSQLQRPSTRFSLMQFSDYFRVHFTFNNFIST
SSPLSLLGSVRQLRGYTYTASAIKHVITELFTTQSGARQDATKVLIVITDGRKQGDNLSYDSVIPMAEAA
SIIRYAIGVGKAFYNEHSKQELKAIASMPSHEYVFSVENFDALKDIENQLKEKIFAIEGTETPSSSTFEL
EMSQEGFSAVFTPDGPVLGAVGSFSWSGGAFLYPSNMRPTFINMSQENEDMRDAYLGYSTALAFWKGVHS
LILGAPRHQHTGKVVIFTQESRHWRPKSEVRGTQIGSYFGASLCSVDMDRDGSTDLVLIGVPHYYEHTRG
GQVSVCPMPGVGSRWHCGTTLHGEQGHPWGRFGAALTVLGDVNGDSLADVAIGAPGEEENRGAVYIFHGA
SRQDIAPSPSQRISASQIPSRIQYFGQSLSGGQDLTRDGLVDLAVGSKGRVLLLRTRPILRVSPTVHFTP
AEISRSVFECQEQVAPEQTLSDATVCLHIHESPKTQLGDLRSTVTFDLALDHGRLSTRAIFKETKTRALT
RVKTLGLNKHCESVKLLLPACVEDSVTPITLRLNFSLVGVPISSLQNLQPMLAVDDQTYFTASLPFEKNC
GADHICQDDLSVVFGFPDLKTLVVGSDLELNVDVTVSNDGEDSYGTTVTLFYPVGLSFRRVAEGQVFLRK
KEDQQWQRRGQHSLHLMCDSTPDRSQGLWSTSCSSRHVIFRGGSQMTFLVTFDVSPKAELGDRLLLRARV
GSENNVPGTPKTTFQLELPVKYAVYTMISSHDQFTKYLNFSTSEKEKTSVVEHRFQVNNLGQRDVPVSIN
FWVPIELKGEAVWTVMVSHPQNPLTQCYRNRLKPTQFDLLTHMQKSPVLDCSIADCLHLRCDIPSLGILD
ELYFILKGNLSFGWISQTLQKKVLLLSEAEITFNTSVYSQLPGQEAFLRAQTKTVLEMYKVHNPVPLIVG
SSVGGLLLLAIITAILYKAGFFKRQYKEMLEEANGQFVSDGTPTPQVAQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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