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Report for CCDS20978.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20978.1 Public Mus musculus 7 Erf 23 108 98 CCDS HistoryNCBI Gene:13875Re-query CCDS DB by CCDS ID:20978.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20978.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000045847.14 ENSMUSP00000041912.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000045847.14Link to Ensembl Protein Viewer:ENSMUSP00000041912.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000045847Re-query CCDS DB by Protein ID:ENSMUSP00000041912
Original member NCBI NM_010155.3 NP_034285.3 Updated not alive Link to Nucleotide Sequence:NM_010155.3Link to Protein Sequence:NP_034285.3Re-query CCDS DB by Nucleotide ID:NM_010155Re-query CCDS DB by Protein ID:NP_034285
Current member NCBI NM_010155.4 NP_034285.3 Accepted alive Link to Nucleotide Sequence:NM_010155.4Link to Protein Sequence:NP_034285.3Re-query CCDS DB by Nucleotide ID:NM_010155Re-query CCDS DB by Protein ID:NP_034285Link to BLAST:NP_034285.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034285.3 551 P70459 551 99.8185% 0 1

Chromosomal Locations for CCDS 20978.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 25244249 25245531 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 25245634 25245749 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 25246088 25246322 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 25250579 25250600 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1656 nt):
ATGAAGACCCCGGCGGACACAGGGTTTGCCTTCCCAGATTGGGCCTACAAACCGGAGTCATCCCCTGGCT
CCAGGCAGATCCAGCTGTGGCACTTTATCCTGGAGCTGCTTCGGAAAGAGGAGTACCAGGGCGTCATCGC
TTGGCAGGGGGACTACGGGGAGTTTGTCATCAAGGACCCTGATGAAGTGGCTCGCCTCTGGGGGGTCCGC
AAGTGCAAACCCCAGATGAACTATGACAAGCTGAGCCGGGCTTTGCGCTATTATTACAACAAGCGCATTC
TACACAAGACCAAGGGGAAACGGTTCACCTACAAGTTCAACTTCAACAAACTGGTGCTGGTCAATTACCC
TTTCATCGATATGGGGCTGGCTGGGGGTGCAGTTCCCCAAAGCGCCCCACCAGTGCCATCAGGCGGCAGC
CATTTCCGCTTCCCTCCCTCAACACCCTCTGAGGTGCTGTCCCCCACTGAGGATCCCCGATCTCCACCGG
CTTGTTCTTCATCATCCTCTTCTCTCTTCTCTGCTGTGGTTGCCCGACGCCTGGGCCGAGGCTCAGTCAG
TGACTGTAGTGATGGCACCTCAGAGCTGGAGGAGCCTCTGGGAGAGGACCCCAGGGCACGACCACCTGGC
CCTCCGGAGCTGGGTGCCTTCCGAGGGCCCCCCCTGGCCCGCCTCCCGCATGACCCTGGTGTCTTCCGTG
TCTATCCTCGGCCCCGGGGTGGTCCTGAACCCCTGAGTCCCTTCCCTGTGTCACCTTTGGCTGGGCCTGG
CTCCCTTCTACCCCCTCAGCTCTCCCCAGCTCTGCCCATGACTCCCACCCACCTGGCCTACACACCCTCA
CCCACGCTGAGTCCTATGTACCCCAGTGGTGGTGGGGGCCCTAGTGGCTCAGGGGGAGGTTCCCACTTCT
CCTTCAGTCCTGAGGACATGAAACGGTACCTGCAGGCCCACACCCAAAGCGTCTACAACTACCACCTCAG
TCCCCGCGCCTTCCTGCACTACCCAGGGCTGGTGGTGCCCCAGCCTCAGCGCCCTGACAAGTGCCCACTG
CCGCCCATGGCACCGGAGACCCCGCCGGTCCCCTCCTCAGCCTCGTCTTCCTCTTCCTCCTCTTCATCCC
CGTTCAAGTTTAAGCTGCAGCCACCCCCGCTAGGACGCCGGCAGCGGGCAGCTGGAGAGAAGGCTCTAGG
AGGCACTGACAAGAGCAGTGGTGGCAGTGGCTCGGGTGGACTGGCTGAGGGGGCAGGTGCAGTAGCTCCC
CCACCGCCACCACCCCAGATTAAGGTGGAGCCCATCTCAGAAGGAGAGTCGGAGGAGGTGGAGGTGACTG
ACATCAGTGACGAAGATGAGGAAGATGGGGAGGTGTTCAAGACTCCCCGTGCCCCGCCTGCACCCCCCAA
GCCAGAGCCCGGAGAGGCACCGGGGGTGGCCCAGTGCATGCCCCTTAAACTGCGCTTTAAGCGGCGCTGG
AGTGAAGACTGTCGCCTGGAGGGGGGCGGGTGCCTGTCTGGGGGCCCTGAAGATGAGGGTGAGGACAAGA
AGGTGCGTGGGGACGTGGGCCCTGGGGAGTCTGGGGGACCCCTTACCCCACGACGGGTGAGCTCTGACCT
CCAGCACGCCACAGCCCAACTCTCCCTGGAGCACCGAGATTCCTGA

Translation (551 aa):
MKTPADTGFAFPDWAYKPESSPGSRQIQLWHFILELLRKEEYQGVIAWQGDYGEFVIKDPDEVARLWGVR
KCKPQMNYDKLSRALRYYYNKRILHKTKGKRFTYKFNFNKLVLVNYPFIDMGLAGGAVPQSAPPVPSGGS
HFRFPPSTPSEVLSPTEDPRSPPACSSSSSSLFSAVVARRLGRGSVSDCSDGTSELEEPLGEDPRARPPG
PPELGAFRGPPLARLPHDPGVFRVYPRPRGGPEPLSPFPVSPLAGPGSLLPPQLSPALPMTPTHLAYTPS
PTLSPMYPSGGGGPSGSGGGSHFSFSPEDMKRYLQAHTQSVYNYHLSPRAFLHYPGLVVPQPQRPDKCPL
PPMAPETPPVPSSASSSSSSSSSPFKFKLQPPPLGRRQRAAGEKALGGTDKSSGGSGSGGLAEGAGAVAP
PPPPPQIKVEPISEGESEEVEVTDISDEDEEDGEVFKTPRAPPAPPKPEPGEAPGVAQCMPLKLRFKRRW
SEDCRLEGGGCLSGGPEDEGEDKKVRGDVGPGESGGPLTPRRVSSDLQHATAQLSLEHRDS


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
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