NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS89839.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
89839.1 Public Mus musculus 4 Dhdds 23 108 98 CCDS HistoryNCBI Gene:67422Re-query CCDS DB by CCDS ID:89839.1Re-query CCDS DB by GeneID:67422See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 89839.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000105887.7 ENSMUSP00000101511.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000105887.7Link to Ensembl Protein Viewer:ENSMUSP00000101511.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000105887Re-query CCDS DB by Protein ID:ENSMUSP00000101511
Original member Current member NCBI NM_001362960.1 NP_001349889.1 Accepted alive Link to Nucleotide Sequence:NM_001362960.1Link to Protein Sequence:NP_001349889.1Re-query CCDS DB by Nucleotide ID:NM_001362960Re-query CCDS DB by Protein ID:NP_001349889Link to BLAST:NP_001349889.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001349889.1 334 Q99KU1-2 334 100% 0 0

Chromosomal Locations for CCDS 89839.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 133971017 133971256 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 133980124 133980231 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 133982800 133982914 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 133991279 133991380 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 133992464 133992580 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 133994162 133994304 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 133996822 133996938 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 134000269 134000331 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1005 nt):
ATGTCATGGATCAAAGAAGGAGAGCTGTCACTGTGGGAACGGTTCTGTGCTAACATCATAAAGGCTGGCC
CAGTACCCAAACATATCGCGTTCATAATGGACGGCAACCGTCGCTATGCCAAGAAGTGTCAGGTGGAGCG
CCAGGAGGGCCACACACAGGGCTTCAATAAGCTTGCTGAGACTCTCCGCTGGTGTTTGAACCTGGGCATC
CTAGAAGTGACTGTCTACGCATTCAGCATTGAGAACTTCAAACGTTCCAAGAGTGAGGTTGACGGACTCC
TGGATCTAGCCAGACAGAAGTTCAGCTGCTTGATGGAAGAACAGGAGAAGCTGCAGAAGCACGGGGTGTG
CATCCGCGTCCTGGGTGATCTGCATCTGCTGCCCTTGGACCTCCAGGAGAAGATTGCGCATGCCATCCAG
GCTACTAAGAACTACAATAAGTGTTTCCTCAATGTCTGCTTTGCATACACATCACGTCATGAGATTGCCA
ATGCTGTGAGAGAGATGGCCTGGGGCGTGGAACAAGGTCTGCTGGAACCCAGTGATGTCTCCGAGTCTCT
GCTCGATAAGTGCCTCTATAGCAACCACTCTCCTCATCCCGACATCCTGATCCGGACTTCTGGGGAGGTG
CGGCTGAGTGACTTCTTGCTCTGGCAGACGTCCCATTCCTGCCTCGTGTTCCAGCCTGTCCTGTGGCCAG
AATACACATTTTGGAACCTGTGTGAGGCAATTCTGCAGTTTCAGAGGAACCATGGTGCACTTCAGCAGAA
GGCCCGAGACATGTACGCTGAGGAGCGGAAGAGGCGCCAGCTGGAGAGGGACCAGGCCGCAGTGACAGAG
CAGCTGCTTCGAGAGGGGCTCCAGGCCAGTGGGGATGCCCAACTCCGACGGACACGCTTGCACAAACTCT
CCACCAAACGGGAAGAGCGAGTCCAAGGCTTCCTGAAGGCCTTGGAACTTAAACGGGCCAACTGGCTGGC
ACTTTGGGGCACTGCATCTGCCTAA

Translation (334 aa):
MSWIKEGELSLWERFCANIIKAGPVPKHIAFIMDGNRRYAKKCQVERQEGHTQGFNKLAETLRWCLNLGI
LEVTVYAFSIENFKRSKSEVDGLLDLARQKFSCLMEEQEKLQKHGVCIRVLGDLHLLPLDLQEKIAHAIQ
ATKNYNKCFLNVCFAYTSRHEIANAVREMAWGVEQGLLEPSDVSESLLDKCLYSNHSPHPDILIRTSGEV
RLSDFLLWQTSHSCLVFQPVLWPEYTFWNLCEAILQFQRNHGALQQKARDMYAEERKRRQLERDQAAVTE
QLLREGLQASGDAQLRRTRLHKLSTKREERVQGFLKALELKRANWLALWGTASA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH