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Report for CCDS18824.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18824.1 Public Mus musculus 4 Ddost 23 108 98 CCDS HistoryNCBI Gene:13200Re-query CCDS DB by CCDS ID:18824.1Re-query CCDS DB by GeneID:13200See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18824.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000030538.4 ENSMUSP00000030538.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000030538.4Link to Ensembl Protein Viewer:ENSMUSP00000030538.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000030538Re-query CCDS DB by Protein ID:ENSMUSP00000030538
Original member Current member NCBI NM_007838.3 NP_031864.2 Accepted alive Link to Nucleotide Sequence:NM_007838.3Link to Protein Sequence:NP_031864.2Re-query CCDS DB by Nucleotide ID:NM_007838Re-query CCDS DB by Protein ID:NP_031864Link to BLAST:NP_031864.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_031864.2 441 O54734 441 100% 0 0

Chromosomal Locations for CCDS 18824.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 138304879 138305038 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 138305155 138305265 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 138308243 138308329 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 138309350 138309453 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 138309590 138309684 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 138310184 138310277 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 138310603 138310751 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 138310841 138310988 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 138311410 138311530 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 138311640 138311746 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 138311834 138311983 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1326 nt):
ATGAAGATGGATCCCCGCCTCGCCGTCCGCGCCTGGCCCCTCTGCGGGCTGCTGCTGGCCGTGCTCGGCT
GCGTCTGCGCCAGCGGCCCCCGCACCCTCGTGCTGCTGGACAACCTGAACGTGCGGGACACGCACTCGCT
GTTCTTCCGCAGCCTGAAGGACCGGGGCTTTGAGCTCACCTTCAAGACCGCAGATGACCCCAGCTTGTCC
CTCATTAAGTACGGGGAGTTCCTCTATGACAACCTTATCATCTTTTCCCCGTCGGTGGAAGATTTTGGAG
GCAACATCAACGTGGAGACCATCAGTGCCTTCATTGATGGTGGCGGCAGCGTTTTGGTGGCTGCCAGCTC
TGATATTGGTGACCCTCTTCGGGAGCTGGGCAGTGAGTGTGGGATTGAATTTGATGAAGAGAAAACAGCT
GTCATCGACCACCACAACTATGATGTTTCTGACCTTGGCCAGCACACACTCATTGTGGCTGACACTGAGA
ACCTGCTGAAGGCCCCGACCATTGTTGGCAAGTCATCTCTGAACCCCATTCTCTTCCGAGGAGTTGGAAT
GGTGGCAGACCCGGACAATCCCTTGGTTTTGGACATCCTAACAGGCTCTTCAACCTCTTACTCCTTCTTC
CCAGATAAACCAATCACCCAGTACCCCCATGCGGTGGGGAGGAACACTCTGCTGATTGCCGGGCTCCAGG
CCAGGAACAACGCCCGGGTCATCTTCAGTGGCTCTCTGGATTTCTTCAGCGATGCCTTCTTCAACTCGGC
AGTGCAGAAGGCCACACCCGGTGCGCAGAGGTATTCTCAGACAGGCAACTATGAACTAGCTGTGGCCCTC
TCACGCTGGGTGTTCAAGGAGGAGGGTGTCCTTCGAGTAGGGCCTGTGTCCCATCACCGGGTGGGCGAGA
TGGCTCCACCCAATGCCTACACTGTCACCGACTTGGTGGAGTATAGCATCATCATAGAACAGCTCTCCAA
TGGCAAGTGGGTCCCCTTTGATGGTGATGACATTCAGCTGGAGTTCGTGCGCATCGACCCCTTCGTGAGG
ACCTTCCTGAAGAGGAAAGGTGGCAAGTACAGTGTCCAGTTCAAGCTGCCTGACGTGTATGGTGTATTCC
AGTTTAAAGTGGATTACAACCGGCTAGGCTACACCCACCTGTACTCTTCCACCCAGGTGTCAGTGAGGCC
ACTCCAGCACACGCAGTATGAGCGCTTCATCCCCTCGGCCTATCCCTACTATGCCAGTGCCTTCTCCATG
ATGGCCGGGCTCTTCATCTTCAGCATCGTCTTCTTGCACATGAAGGAGAAGGAGAAGTCTGACTGA

Translation (441 aa):
MKMDPRLAVRAWPLCGLLLAVLGCVCASGPRTLVLLDNLNVRDTHSLFFRSLKDRGFELTFKTADDPSLS
LIKYGEFLYDNLIIFSPSVEDFGGNINVETISAFIDGGGSVLVAASSDIGDPLRELGSECGIEFDEEKTA
VIDHHNYDVSDLGQHTLIVADTENLLKAPTIVGKSSLNPILFRGVGMVADPDNPLVLDILTGSSTSYSFF
PDKPITQYPHAVGRNTLLIAGLQARNNARVIFSGSLDFFSDAFFNSAVQKATPGAQRYSQTGNYELAVAL
SRWVFKEEGVLRVGPVSHHRVGEMAPPNAYTVTDLVEYSIIIEQLSNGKWVPFDGDDIQLEFVRIDPFVR
TFLKRKGGKYSVQFKLPDVYGVFQFKVDYNRLGYTHLYSSTQVSVRPLQHTQYERFIPSAYPYYASAFSM
MAGLFIFSIVFLHMKEKEKSD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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