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Report for CCDS17781.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17781.1 Public Mus musculus 3 S1pr1 23 108 98 CCDS HistoryNCBI Gene:13609Re-query CCDS DB by CCDS ID:17781.1See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17781.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000055676.3 ENSMUSP00000050897.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000055676.3Link to Ensembl Protein Viewer:ENSMUSP00000050897.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000055676Re-query CCDS DB by Protein ID:ENSMUSP00000050897
Original member Current member NCBI NM_007901.5 NP_031927.2 Accepted alive Link to Nucleotide Sequence:NM_007901.5Link to Protein Sequence:NP_031927.2Re-query CCDS DB by Nucleotide ID:NM_007901Re-query CCDS DB by Protein ID:NP_031927Link to BLAST:NP_031927.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_031927.2 382 O08530 382 100% 0 0

Chromosomal Locations for CCDS 17781.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 115711795 115712943 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1149 nt):
ATGGTGTCCACTAGCATCCCGGAGGTTAAAGCTCTCCGCAGCTCAGTCTCTGACTATGGGAACTATGATA
TCATAGTCCGGCATTACAACTACACAGGCAAGTTGAACATCGGGGCGGAGAAGGACCATGGCATTAAACT
GACTTCAGTGGTGTTCATTCTCATCTGCTGCTTCATCATCCTAGAGAATATATTTGTCTTGCTAACTATT
TGGAAAACCAAGAAGTTCCACCGGCCCATGTACTATTTCATAGGCAACCTAGCCCTCTCGGACCTATTAG
CAGGCGTGGCTTACACAGCTAACCTGCTGTTGTCTGGGGCCACCACTTACAAGCTCACACCTGCCCAGTG
GTTTCTGCGGGAAGGGAGTATGTTTGTGGCTCTCTCTGCATCAGTCTTCAGCCTCCTTGCCATCGCCATT
GAGCGCTACATCACCATGCTGAAGATGAAACTACACAACGGGAGCAACAGCTCGCGCTCCTTTCTGCTGA
TCAGCGCCTGCTGGGTCATCTCCCTCATCCTGGGGGGCCTGCCCATCATGGGCTGGAACTGCATCAGCTC
GCTGTCTAGCTGCTCCACCGTGCTCCCGCTCTACCACAAGCACTATATTCTCTTCTGCACCACCGTCTTC
ACTCTGCTCCTGCTTTCCATCGTCATCCTCTACTGCAGGATCTACTCCTTGGTCAGGACTCGAAGCCGCC
GCCTGACCTTCCGCAAGAACATCTCCAAGGCCAGTCGCAGTTCTGAGAAGTCTCTGGCCTTGCTGAAGAC
GGTGATCATTGTCCTGAGTGTCTTCATTGCCTGCTGGGCCCCTCTCTTCATCCTACTACTGTTAGATGTG
GGCTGCAAGGCGAAGACCTGTGACATCCTGTACAAAGCAGAGTACTTCCTGGTTCTGGCTGTGCTGAACT
CAGGTACCAACCCCATCATCTACACTCTGACCAACAAGGAGATGCGCCGGGCCTTCATCCGGATCGTATC
TTGTTGCAAATGCCCCAACGGAGACTCTGCTGGCAAATTCAAGAGGCCCATCATCCCAGGCATGGAATTT
AGCCGCAGCAAATCAGACAACTCCTCTCACCCCCAGAAGGACGATGGGGACAACCCAGAGACCATTATGT
CGTCTGGAAACGTCAATTCTTCTTCCTAA

Translation (382 aa):
MVSTSIPEVKALRSSVSDYGNYDIIVRHYNYTGKLNIGAEKDHGIKLTSVVFILICCFIILENIFVLLTI
WKTKKFHRPMYYFIGNLALSDLLAGVAYTANLLLSGATTYKLTPAQWFLREGSMFVALSASVFSLLAIAI
ERYITMLKMKLHNGSNSSRSFLLISACWVISLILGGLPIMGWNCISSLSSCSTVLPLYHKHYILFCTTVF
TLLLLSIVILYCRIYSLVRTRSRRLTFRKNISKASRSSEKSLALLKTVIIVLSVFIACWAPLFILLLLDV
GCKAKTCDILYKAEYFLVLAVLNSGTNPIIYTLTNKEMRRAFIRIVSCCKCPNGDSAGKFKRPIIPGMEF
SRSKSDNSSHPQKDDGDNPETIMSSGNVNSSS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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