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Report for CCDS90555.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
90555.1 Public Mus musculus 9 Ube4a 23 108 98 CCDS HistoryNCBI Gene:140630Re-query CCDS DB by CCDS ID:90555.1Re-query CCDS DB by GeneID:140630See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 90555.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000138559.8 ENSMUSP00000149791.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000138559.8Link to Ensembl Protein Viewer:ENSMUSP00000149791.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000138559Re-query CCDS DB by Protein ID:ENSMUSP00000149791
Original member Current member NCBI NM_001361075.1 NP_001348004.1 Accepted alive Link to Nucleotide Sequence:NM_001361075.1Link to Protein Sequence:NP_001348004.1Re-query CCDS DB by Nucleotide ID:NM_001361075Re-query CCDS DB by Protein ID:NP_001348004Link to BLAST:NP_001348004.1

Chromosomal Locations for CCDS 90555.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 44947978 44948217 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44948782 44948984 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44949733 44949892 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44950781 44950933 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44951990 44952102 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44952942 44953172 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44959979 44960099 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1221 nt):
ATGACAGACCAGGAGAATAACAACAACATCTCAAGTAACCCCTTTGCTGCTCTTTTTGGCTCCCTGGCTG
ATGCCAAGCAGTTTGCAGCAATCCAGAAAGAGCAGCTGAAGCAGCAGTCCGGTAGTGTATTTGGTTCTGA
GGAAGAAGCGTTGTGTAACAGCTTACATGTTCCAGCAGATGAGCTCCCAGCAAGCCCAGATGACTCGGAT
AATAGTGTGTCAGAGAGCCTGGATGAGTTTGACTACTCTGTATCTGAGATTAGCCGCTCCTTCCGGACAC
ACCAAGAAATGTGTGAGCAACTCAACATCAATCACATGATCCAGAGGATCTTCCTCATCACCCTGGACAA
CAGTGATCCAAGCTTGAAAAGCGGGAATGGCATCCCCAGCCGTTGTGTGTACTTGGAAGAAATGGCAGTA
GAGCTGGAAGATCAAGACTGGCTTGATATGAGCAATGTTGAGCAGGCCATCTTTGCTCGATTATTGCTTC
AAGATCCAGGAAACCACTTGATCAGCATGACTTCCTCCACAACTTTAAATCTCTCTGCTGATCGTGATGC
AGGAGAGAGGCACATCTTCTGTTACCTTTACTCCTGCTTCCAGAGAGCCAAGGAAGAGATTACCAAAGTT
CCAGAAAACCTACTCCCCTTTGCAGTGCAGTGCAGAAACCTCACTGTGTCCAACACTCGAACAGTTCTCC
TCACCCCAGAGATCTATGTTGACCAAAACATCCATGAGCAACTGGTAGATTTGATGTTGGAAGCTATTCA
GGGAGCCCATTTTGAAGATGTAACTGAATTTTTAGAAGAGGTCATTGAAGCCTTGCTGTTGGATGAGGAG
GTTCGAACATTTCCTGAAGTCATGATTCCAGTGTTTGATATTTTACTCAGCCGAATAAAAGATCTGGAAC
TCTGCCAGATCCTCCTGTATGCATATCTGGACATTCTTCTCTATTTCACTAGGCAGAAGGATATGGCCAA
GGTGTTTTTAGAATACATTCAGCCCAAGGATCCCAGCAATGGGCAGATGTATCAGAAGACCTTGCTGGGA
GTCATCCTGAATATCTCGTGCTTGTTAAAGACTCCGGGTGTGGTAGAGAACCATGGCTTCTTCCTGAATC
CATCCCGTTCCAGTCCTCAGGAGATCAAAGTACAGGAGGCCAACATCCATCAGGTGGAACCGCCTCCCAG
GGTGTCTGCCACAGCCCCTGCTTTGAGATGA

Translation (406 aa):
MTDQENNNNISSNPFAALFGSLADAKQFAAIQKEQLKQQSGSVFGSEEEALCNSLHVPADELPASPDDSD
NSVSESLDEFDYSVSEISRSFRTHQEMCEQLNINHMIQRIFLITLDNSDPSLKSGNGIPSRCVYLEEMAV
ELEDQDWLDMSNVEQAIFARLLLQDPGNHLISMTSSTTLNLSADRDAGERHIFCYLYSCFQRAKEEITKV
PENLLPFAVQCRNLTVSNTRTVLLTPEIYVDQNIHEQLVDLMLEAIQGAHFEDVTEFLEEVIEALLLDEE
VRTFPEVMIPVFDILLSRIKDLELCQILLYAYLDILLYFTRQKDMAKVFLEYIQPKDPSNGQMYQKTLLG
VILNISCLLKTPGVVENHGFFLNPSRSSPQEIKVQEANIHQVEPPPRVSATAPALR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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