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Report for CCDS23255.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23255.1 Public Mus musculus 9 Nr2e3 23 108 98 CCDS HistoryNCBI Gene:23958Re-query CCDS DB by CCDS ID:23255.1Re-query CCDS DB by GeneID:23958See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23255.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000034831.2 ENSMUSP00000034831.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000034831.2Link to Ensembl Protein Viewer:ENSMUSP00000034831.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000034831Re-query CCDS DB by Protein ID:ENSMUSP00000034831
Original member Current member NCBI NM_013708.4 NP_038736.1 Accepted alive Link to Nucleotide Sequence:NM_013708.4Link to Protein Sequence:NP_038736.1Re-query CCDS DB by Nucleotide ID:NM_013708Re-query CCDS DB by Protein ID:NP_038736Link to BLAST:NP_038736.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_038736.1 395 Q9QXZ7 395 100% 0 0

Chromosomal Locations for CCDS 23255.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 59943387 59943519 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 59946962 59947067 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 59947313 59947553 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 59948363 59948520 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 59948603 59948824 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 59948925 59949028 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 59949182 59949308 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 59949788 59949884 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1188 nt):
ATGAGCTCTACAGTGGCTGCCTCCACTATGCCTGTGTCTGTGGCGGCCTCCAAGAAGGAGTCTCCAGGTA
GATGGGGCCTTGGAGAGGATCCAACAGGTGTGGGCCCCTCGCTCCAGTGCCGAGTGTGTGGGGACAGCAG
CAGTGGGAAACATTATGGCATCTATGCCTGCAATGGCTGCAGTGGCTTCTTCAAGAGGAGTGTGAGAAGG
AGGCTCATCTACAGGTGCCAAGTCGGGGCAGGGATGTGCCCAGTGGATAAGGCCCATCGCAATCAGTGCC
AGGCCTGCCGGCTGAAGAAGTGCTTACAAGCAGGCATGAACCAAGATGCTGTGCAGAATGAGCGCCAACC
TCGGAGCATGGCTCAGGTCCACCTGGATGCCATGGAAACAGGCAGTGACCCCCGATCAGAACCAGTGGTA
GCCTCTCCTGCTCTGGCAGGGCCCAGTCCCCGGGGCCCCACGTCTGTGTCTGCAACCAGAGCCATGGGCC
ACCACTTTATGGCCAGCCTTATCACCGCCGAAACTTGTGCTAAACTGGAGCCAGAGGACGCTGAAGAGAA
TATTGATGTCACCAGCAATGACCCCGAGTTCCCCGCATCCCCCTGCAGTCTGGATGGCATCCATGAGACA
TCTGCTCGCCTGCTCTTCATGGCTGTCAAATGGGCCAAAAACTTGCCTGTGTTTTCCAACCTGCCTTTCC
GGGACCAGGTGATCTTGCTGGAAGAGGCATGGAATGAGCTTTTCCTTCTTGGAGCCATACAGTGGTCTCT
GCCCCTGGACAGCTGCCCACTGCTGGCACCACCTGAGGCGTCCGGCAGCTCTCAGGGCAGGCTGGCCTTG
GCCAGTGCAGAGACGCGCTTCCTGCAGGAAACCATCTCCCGGTTCCGAGCTCTGGCAGTGGATCCCACAG
AGTTTGCCTGCCTGAAGGCCCTGGTCCTCTTCAAACCTGAAACACGAGGCCTGAAGGATCCTGAGCACGT
GGAGGCTTTGCAGGACCAGTCCCAGGTGATGCTAAGCCAGCATAGCAAGGCTCACCACCCCAGCCAGCCT
GTGAGGTTTGGGAAATTGCTCCTCCTGCTCCCATCTTTGAGGTTCCTCACGGCTGAGCGCATTGAGCTTC
TCTTCTTCAGAAAGACCATAGGGAACACTCCGATGGAGAAGCTCCTGTGTGACATGTTCAAAAACTAG

Translation (395 aa):
MSSTVAASTMPVSVAASKKESPGRWGLGEDPTGVGPSLQCRVCGDSSSGKHYGIYACNGCSGFFKRSVRR
RLIYRCQVGAGMCPVDKAHRNQCQACRLKKCLQAGMNQDAVQNERQPRSMAQVHLDAMETGSDPRSEPVV
ASPALAGPSPRGPTSVSATRAMGHHFMASLITAETCAKLEPEDAEENIDVTSNDPEFPASPCSLDGIHET
SARLLFMAVKWAKNLPVFSNLPFRDQVILLEEAWNELFLLGAIQWSLPLDSCPLLAPPEASGSSQGRLAL
ASAETRFLQETISRFRALAVDPTEFACLKALVLFKPETRGLKDPEHVEALQDQSQVMLSQHSKAHHPSQP
VRFGKLLLLLPSLRFLTAERIELLFFRKTIGNTPMEKLLCDMFKN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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