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Report for CCDS88046.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
88046.1 Public Mus musculus 10 Ilvbl 23 108 98 CCDS HistoryNCBI Gene:216136Re-query CCDS DB by CCDS ID:88046.1Re-query CCDS DB by GeneID:216136See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 88046.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000218271.1 ENSMUSP00000151480.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000218271.1Link to Ensembl Protein Viewer:ENSMUSP00000151480.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000218271Re-query CCDS DB by Protein ID:ENSMUSP00000151480
Original member Current member NCBI NM_001359303.1 NP_001346232.1 Accepted alive Link to Nucleotide Sequence:NM_001359303.1Link to Protein Sequence:NP_001346232.1Re-query CCDS DB by Nucleotide ID:NM_001359303Re-query CCDS DB by Protein ID:NP_001346232Link to BLAST:NP_001346232.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001346232.1 401 Q8BU33-3 401 100% 0 0

Chromosomal Locations for CCDS 88046.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 78575097 78575231 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 78576582 78576783 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 78576900 78577027 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 78577111 78577249 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 78577342 78577453 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 78579021 78579120 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 78579463 78579560 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 78579666 78579802 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 78581056 78581190 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 78581414 78581433 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1206 nt):
ATGGAAACTTCTGCGGCCGCTGCATCTGCGGGAGGCTTCTTCCCCTCCTTCCTGCTCCTGGCGTTTGGGA
CGCTGGTGGCTGCCGTGCTGGGCGTCGCTCACAGACTGGGGCTCTTCTATCAGCTGATGCACAAGGTGGA
CAAGACAAGCATCCGGCATGGTGGAGAGAGTGTCGCAGCTGTGCTCCGAGCCCATGGTGTACGCTTTGTC
TTCACATTGGTCGGTGGGCACATTTCCCCACTGCTGGTGGCCTGTGAGAAGCTGGGTATCCGAGTGGTAG
ACACACGCCACGAGGTCACTGCTGTCTTTGCTGCTGATGCTGTGGCCCGCCTGACTGGGACAGTGGGTGT
GGCAGCAGTGACAGCCGGTCCTGGCCTCACCAACACTGTGACTGCAGTGAAGAATGCACAAGTGGCACAG
TCCCCAGTCCTGCTTTTGGGTGGAGCTGCCAGCACCCTGCTGCAGAAACGGGGCGCACTTCAGGCCATTG
ATCAGATGTCTCTGTTCAGGCCACTCTGCAAGTTTTGTGCTTCTGTGCGAAGGGTACGGGACATTGTACC
TACCCTGAGGACTGCAATAGCTGCTGCCCAGTCAGGCACCCCAGGTCCAGTGTTTGTGGAGCTGCCTCTT
GATGTACTATATCCTTACTTCATGGTTGAGAAGGAGATGATACCAACCAAGTTGCCCAATAGCCTCATGG
GCCGTGTGGTTGTCTGGTATTTACAGAACTGCCTGGCCAACCTCTTTGTTGGGGCTTGGGAACCTCGTCC
CGAGGGACCTCTGCCCTTGGATATTCCCCAGGCATCTCCGCAGCAGGTCCAGCGCTGTGTGGAGATCCTG
AGCCGGGCCAAGAGGCCTCTGCTGGTACTGGGGAGCCAGGCCTTGCTGCCCCCGACCCCTGCCAACAAGC
TTAGAGCTGCCGTGGAGACCCTGGGTGTCCCCTGCTTTCTAGGGGGGATGTCTCGGGGGCTGCTGGGCCG
CAACCACCCTCTCCACATCCGGCAGAACCGCAGCGCTGCTCTGAAGAAAGCAGATGTTGTTGTCCTGGCA
GGCGCTGTGTGTGATTTCCGCCTGTCTTATGGCCGGGTCCTCAACCGCAAGAGCAGCATCATCATTGTCA
ACCGGAACCGGGATGATCTCTTGCTCAACTCGGACATCTTCTGGAAGCCTCAGGAGGCTGTGCAGGCTGG
ACCAGCCTCTCCGTGA

Translation (401 aa):
METSAAAASAGGFFPSFLLLAFGTLVAAVLGVAHRLGLFYQLMHKVDKTSIRHGGESVAAVLRAHGVRFV
FTLVGGHISPLLVACEKLGIRVVDTRHEVTAVFAADAVARLTGTVGVAAVTAGPGLTNTVTAVKNAQVAQ
SPVLLLGGAASTLLQKRGALQAIDQMSLFRPLCKFCASVRRVRDIVPTLRTAIAAAQSGTPGPVFVELPL
DVLYPYFMVEKEMIPTKLPNSLMGRVVVWYLQNCLANLFVGAWEPRPEGPLPLDIPQASPQQVQRCVEIL
SRAKRPLLVLGSQALLPPTPANKLRAAVETLGVPCFLGGMSRGLLGRNHPLHIRQNRSAALKKADVVVLA
GAVCDFRLSYGRVLNRKSSIIIVNRNRDDLLLNSDIFWKPQEAVQAGPASP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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