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Report for CCDS88017.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
88017.1 Public Mus musculus 10 Rtkn2 23 108 98 CCDS HistoryNCBI Gene:170799Re-query CCDS DB by CCDS ID:88017.1Re-query CCDS DB by GeneID:170799See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 88017.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000117086.1 ENSMUSP00000112419.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000117086.1Link to Ensembl Protein Viewer:ENSMUSP00000112419.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000117086Re-query CCDS DB by Protein ID:ENSMUSP00000112419
Original member Current member EBI ENSMUST00000147556.7 ENSMUSP00000116166.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000147556.7Link to Ensembl Protein Viewer:ENSMUSP00000116166.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000147556Re-query CCDS DB by Protein ID:ENSMUSP00000116166
Original member Current member NCBI NM_001359319.1 NP_001346248.1 Accepted alive Link to Nucleotide Sequence:NM_001359319.1Link to Protein Sequence:NP_001346248.1Re-query CCDS DB by Nucleotide ID:NM_001359319Re-query CCDS DB by Protein ID:NP_001346248Link to BLAST:NP_001346248.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001346248.1 601 Q14B46-2 601 100% 0 0

Chromosomal Locations for CCDS 88017.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 67979774 67979812 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 67987307 67987503 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 67997565 67997623 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 68001924 68001977 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 68003204 68003321 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 68005500 68005694 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 68017806 68017900 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 68025513 68025619 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 68026518 68026649 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 68035789 68035951 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 68040031 68040138 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 68041379 68041917 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1806 nt):
ATGGAGGGGCAGCTGCTGAGGGGTCTCGCCGCGCAGCAGGACTGCAGCATCCGAGAGAAAATAGACTTAG
AGATCCGCATGCGAGAAGGAATATGGAAGCTGCTCTCGCTGAGTACGAAAAAAGACCAAGTTTTGCATGC
AGTTAAGAACCTCATGGTGTGCAGTGCTCGGATCCAGGCGTACACGGCAGAGCTGCAGAAGTCAAAAGAA
GAGATTGCAAATCAAACCGGAGCACGGGATTCGAGTTCTGAAAATAAAGAAGGAGAATCCTGCAGAGGAA
AGATCGCCCTGTCAGATATCCGAATACCATTAATGTGGAAAGACTCCGATCACTTCAGTAATAAAGAATG
CACACAGCGCTTCGCCATCTTTTGCTTATTCAGGATGGGAGCTCAGGTGTTTGACACGGACATGGTGATT
GTGGACCAGACAGTCACAGATATATGTTTCGAAAATGTCACCATCTTCAACGAGGCAGGACCGGACTTCC
AGATAAAGATAGAAGTCTACAGCTGCAGCGCAGAGGAGTCCTCCCTAACCAACACCCCGAGGAAGCTGGC
TAAGAAGCTGAAGACGTCCATCAGCAAAGCCACGGGAAGGAAAATCAGCGCAGCGCTCCAGGAAGAGAGC
CCAGAGGCGTGCTTGCTCGCTGGTTCTGTGGCAGGTGCAAAGTACCATTTGCTGGCTCATACCACCCTGA
CCTTGGAAAATGCTGGAGACTGCTTTAAGACCCATAACCTGTCTGTTCACGGAGATGAGGAGTGTTCCTT
TTGGCTTCCCTTGTATGGCAACGTGTGCTGCCGGCTGGTGGCCCAGCCAGCTTGCATGGCTGCAGATGCA
TTTGCAGGATTCCTTAATGAACAGCAAACAGGAAAAGGTCTGGTTGGCTGGAGAAGGCTGTACTGTGCTC
TGAGAGGGGGTAAACTCCGCTGCTTTTATGGTCCGGAAGAAATTGAAGCTAAAGTGGAGCCGGCTCTGGT
GGTTCCTATTGACAAGGAAACCAGAATTCAGGCCGTGGAAAAGGATTCAAAGAAAATGCACTGTTTCTCT
GTCCTCAGCACAGCCGCTGGGCGGGCGGTGAGTCACATCTTTGCGGCTGACAGCCTAGCAGACTTTCAGG
AGTGGATGGGCGCCTTCCGGCAACATTTCTTTGATCTCAGCCAATGGAAGCATTGTTGTGAAGAACTTAT
GAGAATTGAGATTATGTCACCACGAAAACCACCTTTGTTCCTGGCAAAGGAGGCGACCTCAGTGTATTAT
GATATGAGCATCGATTCACCCGTGAAACTGGAAAGTGTAACAGACATAATACAAAAGAAAATCGGAGAGA
CCAACCGACAGTTCCTCATTGGTCGGGATGACCAATCCGCAGCACCCCCGTGGGCCGCTGTCTTTGATGG
CAATCACGAAATGGTCATAGAGAAGAAAGTGTTGTCCCCAATAGGCGAACCGGCTCCGGATGGAAAAAGA
AAAAAGAGGCGAGCCCCACTCCCTCCTACCGATCAGCCGCCCTTCTGCATAAAAACCCAGGGTAGAGCGA
ATCAGTCCAAGGACAGCGCAACCCAGGCTGGGGTCTCTGGAGCCTCATCTTCGCCTTCGGATCCCAGACT
GTCGCCGCCTACGCATCATCTCCAGAAACCTGTGGCAGCCCCTCGCAAACTTCTCCCTGCCAGGAAGAAC
AGTTCAGCGGACATTGGGCACACGGACACTAAAACCAGCCTTGATGCGAAGCCAGTGCCAGTTCCAAGGC
AGAAATCCATCAGAGACATTCTGGACCCACGATCTTGGCTCCAAGCACAAGTATAG

Translation (601 aa):
MEGQLLRGLAAQQDCSIREKIDLEIRMREGIWKLLSLSTKKDQVLHAVKNLMVCSARIQAYTAELQKSKE
EIANQTGARDSSSENKEGESCRGKIALSDIRIPLMWKDSDHFSNKECTQRFAIFCLFRMGAQVFDTDMVI
VDQTVTDICFENVTIFNEAGPDFQIKIEVYSCSAEESSLTNTPRKLAKKLKTSISKATGRKISAALQEES
PEACLLAGSVAGAKYHLLAHTTLTLENAGDCFKTHNLSVHGDEECSFWLPLYGNVCCRLVAQPACMAADA
FAGFLNEQQTGKGLVGWRRLYCALRGGKLRCFYGPEEIEAKVEPALVVPIDKETRIQAVEKDSKKMHCFS
VLSTAAGRAVSHIFAADSLADFQEWMGAFRQHFFDLSQWKHCCEELMRIEIMSPRKPPLFLAKEATSVYY
DMSIDSPVKLESVTDIIQKKIGETNRQFLIGRDDQSAAPPWAAVFDGNHEMVIEKKVLSPIGEPAPDGKR
KKRRAPLPPTDQPPFCIKTQGRANQSKDSATQAGVSGASSSPSDPRLSPPTHHLQKPVAAPRKLLPARKN
SSADIGHTDTKTSLDAKPVPVPRQKSIRDILDPRSWLQAQV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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