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Report for CCDS29336.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29336.1 Public Mus musculus 18 Dcc 23 108 98 CCDS HistoryNCBI Gene:13176Re-query CCDS DB by CCDS ID:29336.1See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 29336.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000114943.10 ENSMUSP00000110593.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000114943.10Link to Ensembl Protein Viewer:ENSMUSP00000110593.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000114943Re-query CCDS DB by Protein ID:ENSMUSP00000110593
Original member Current member NCBI NM_007831.3 NP_031857.2 Accepted alive Link to Nucleotide Sequence:NM_007831.3Link to Protein Sequence:NP_031857.2Re-query CCDS DB by Nucleotide ID:NM_007831Re-query CCDS DB by Protein ID:NP_031857Link to BLAST:NP_031857.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_031857.2 1447 P70211-1 1447 100% 0 0

Chromosomal Locations for CCDS 29336.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 71258990 71259079 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 71262807 71262949 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 71299331 71299543 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 71305972 71306133 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 71321031 71321147 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 71327399 71327625 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 71335939 71336101 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 71342712 71342777 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 71362970 71363002 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 71367045 71367239 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 71370651 71370758 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 71374473 71374611 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 71378655 71378887 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 71384128 71384223 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 71420225 71420419 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 71446337 71446447 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 71456871 71457012 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 71542245 71542294 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 71547303 71547441 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 71549003 71549151 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 71575071 71575225 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 71587871 71588027 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 71679461 71679581 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 71682162 71682316 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 71809060 71809196 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 71810731 71810881 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 71826003 71826287 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 71954754 71955074 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 72350356 72350446 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4344 nt):
ATGGAGAATAGTCTTGGATGTGTTTGGGTACCCAAGCTGGCTTTTGTACTCTTCGGAGCTTCCTTGCTCA
GCGCACATCTTCAAGTCACGGGTTTCCAAATTAAACCTTTCACGTCACTTCATTTTGTGTCTGAACCTTC
GGATGCTGTCACCATGCGGGGAGGAAATGTCCTGCTCAACTGCTCTGCAGAGTCCGACCGAGGAGTTCCA
GTCATCAAGTGGAAGAAAGACGGCCTTATCCTAGCCTTGGGCATGGATGACAGAAAGCAGCAACTTCCTA
ATGGATCTCTGTTGATACAAAACATACTTCATTCCAGACACCATAAGCCGGATGAAGGACTTTACCAATG
CGAGGCATCCTTAGCAGATTCTGGCTCAATTATTAGTCGGACAGCAAAAGTTACGGTAGCAGGGCCATTG
AGGTTCCTTTCCCAGACGGAATCTATCACAGCCTTCATGGGAGATACAGTGTTACTTAAGTGTGAAGTCA
TTGGGGAACCCATGCCAACAATACACTGGCAGAAAAATCAACAAGACCTCAACCCACTCCCAGGAGACTC
GCGTGTGGTCGTCTTGCCCTCCGGAGCATTGCAGATTAGCCGACTTCAGCCAGGAGACAGTGGAGTCTAC
AGATGCTCGGCTCGGAATCCAGCCAGCATAAGAACAGGAAATGAAGCAGAAGTTAGAATTTTATCAGACC
CAGGCCTGCATAGGCAGCTATATTTTCTGCAGAGACCATCCAACGTAATAGCCATTGAAGGGAAAGATGC
TGTCCTGGAGTGCTGTGTTTCTGGCTATCCTCCGCCAAGTTTCACCTGGTTACGAGGCGAGGAGGTCATC
CAACTCAGGTCTAAAAAGTATTCATTGTTGGGTGGAAGCAATTTGCTCATCTCTAATGTGACAGATGATG
ACAGTGGAACCTATACTTGCGTTGTCACCTATAAGAATGAGAATATTAGTGCCTCTGCAGAGCTCACGGT
CTTGGTTCCGCCCTGGTTTTTAAATCACCCTTCCAACCTCTATGCCTATGAGAGCATGGATATTGAGTTT
GAATGTGCAGTTTCTGGGAAGCCTGTGCCCACTGTGAATTGGATGAAGAATGGAGATGTGGTGATCCCGA
GTGACTATTTTCAGATAGTGGGAGGAAGCAACTTACGGATCCTTGGGGTGGTCAAGTCAGATGAAGGCTT
CTATCAATGTGTGGCTGAAAATGAGGCTGGCAATGCCCAAAGTAGTGCCCAGCTGATTGTCCCCAAGCCT
GCCATCCCAAGCTCCAGCATCCTCCCTTCTGCTCCCAGAGATGTGCTCCCTGTCTTGGTTTCTAGTCGCT
TTGTCCGTTTGAGCTGGCGTCCACCTGCAGAAGCAAAAGGGAACATTCAAACCTTCACAGTCTTTTTCTC
CAGAGAGGGTGACAACAGGGAGCGAGCTTTGAATACAACCCAGCCTGGGTCCCTTCAGCTTACTGTGGGA
AACTTGAAACCAGAAGCCATGTACACCTTCAGAGTTGTCGCCTACAATGAGTGGGGACCAGGGGAGAGTT
CTCAGCCCATCAAGGTGGCCACTCAGCCTGAGTTGCAAGTTCCAGGGCCAGTAGAAAACCTGCATGCTGT
ATCTACCTCACCTACCTCAATTCTTATTACATGGGAACCCCCTGCCTATGCAAATGGCCCAGTCCAAGGT
TACAGATTGTTCTGCACTGAGGTGTCTACAGGAAAAGAACAGAATATAGAGGTTGATGGACTATCTTATA
AACTGGAAGGCCTGAAAAAATTCACGGAATATACTCTTCGATTCCTAGCTTATAATCGTTATGGGCCAGG
AGTATCTACTGATGATATAACAGTTGTTACACTTTCAGACGTGCCAAGTGCTCCACCTCAGAACATCTCA
CTGGAAGTGGTTAACTCAAGGAGTATCAAAGTAAGCTGGCTCCCTCCTCCATCGGGAACACAAAATGGAT
TTATTACTGGCTATAAAATTCGACACAGAAAGACTACCCGCAGGGGCGAGATGGAAACACTGGAACCGAA
TAACCTCTGGTACCTCTTCACAGGATTGGAGAAAGGCAGTCAGTACAGTTTCCAAGTGTCGGCCATGACA
GTCAATGGTACTGGACCACCTTCCAACTGGTACACAGCGGAGACCCCAGAGAATGATTTAGATGAGTCTC
AAGTCCCTGACCAGCCGAGTTCTCTTCACGTGAGGCCCCAGACAAACTGTATCATCATGAGTTGGACACC
TCCTCTCAACCCAAACATCGTGGTGAGAGGCTATATTATTGGCTATGGTGTTGGCAGTCCTTATGCTGAA
ACAGTGCGTGTGGACAGTAAGCAGCGGTACTATTCCATCGAGAGACTAGAGTCGAGTTCTCATTATGTAA
TCTCCTTAAAAGCTTTCAACAATGCCGGAGAAGGTGTCCCTCTCTACGAAAGTGCCACCACTCGTTCCAT
AACAGATCCCACTGACCCCGTTGATTATTATCCTTTGCTTGATGATTTCCCCACCTCGGGCCCAGATGTC
TCCACCCCCATGCTCCCACCAGTAGGTGTACAGGCTGTGGCTCTTACCCATGAGGCTGTGAGGGTCAGCT
GGGCAGACAACTCTGTCCCGAAGAACCAGAAAACATCCGATGTGCGACTGTACACCGTTCGGTGGAGGAC
CAGCTTTTCTGCCAGTGCCAAGTACAAGTCAGAAGACACAACATCTCTCAGTTACACAGCGACTGGCCTC
AAGCCCAATACCATGTACGAGTTCTCAGTCATGGTGACCAAGAACAGAAGGTCAAGCACGTGGAGCATGA
CTGCACACGCCACCACCTACGAAGCTGCCCCAACTTCTGCTCCCAAGGATCTGACAGTCATTACTCGAGA
GGGGAAGCCTCGTGCTGTCATTGTGAGCTGGCAGCCTCCCTTGGAAGCCAATGGGAAAATCACTGCTTAT
ATCTTGTTTTATACATTGGACAAGAATATACCAATAGATGATTGGATTATGGAAACTATCAGCGGTGACC
GGCTTACCCATCAGATCATGGATCTCAGCCTTGACACGATGTATTACTTTCGAATTCAAGCACGGAATGT
GAAAGGAGTAGGGCCCCTCTCTGATCCCATCCTCTTCAGGACTTTGAAAGTGGAACACCCTGACAAAATG
GCTAATGACCAAGGTCGTCATGGAGATGGGGGTTATTGGCCAGTTGATACTAACTTGATTGATAGAAGCA
CTCTCAACGAACCACCCATTGGACAGATGCACCCCCCGCATGGCAGTGTCACTCCTCAGAAGAACAGCAA
CCTGCTTGTAATAACCGTGGTCACCGTTGGTGTTCTCACTGTGTTGGTCGTGGTGATTGTAGCAGTGATT
TGCACCCGGCGTTCTTCAGCGCAGCAGAGGAAGAAACGGGCCACACACAGTGTGAGCAAGAGGAAGGGCA
GTCAGAAGGACCTCCGGCCTCCCGATCTTTGGATACATCATGAAGAAATGGAAATGAAAAATATCGAGAA
GCCTACGGGAACCGACCCTGCAGGAAGAGACTCCCCCATCCAGAGCTGCCAAGATCTCACACCAGTCAGC
CATAGCCAGTCAGAAACCCAGATGGGAAGCAAAAGTGCCTCTCATTCAGGTCAGGACACTGAGGACGCAG
GCAGCTCCATGTCCACTTTGGAACGGTCCCTGGCAGCACGCCGGGCCACCAGGGCCAAGCTCATGATTCC
CATGGAGGCCCAGTCCAGTAATCCTGCTGTTGTGAGTGCCATCCCTGTACCAACACTAGAAAGTGCCCAG
TATCCAGGAATCCTCCCATCTCCCACATGTGGATACCCGCATCCACAGTTCACTCTCCGGCCAGTACCAT
TCCCAACGCTGTCTGTGGACCGAGGTTTTGGAGCAGGAAGAACTCAGTCTGTGAGTGAAGGACCAACCAC
GCAACAGCAACCCATGCTGCCCCCAGCTCAGCCCGAACATCCGAGCAGTGAAGAAGCACCCAGTAGAACC
ATCCCCACAGCCTGTGTGCGGCCAACTCATCCACTCCGCAGCTTTGCTAACCCATTACTACCTCCACCCA
TGAGTGCAATAGAACCAAAAGTCCCTTACACACCGCTTTTGTCTCAGCCAGGACCCACCCTTCCCAAGAC
TCATGTTAAAACGGCCTCCCTTGGGCTGGCCGGAAAGGCAAGGTCCCCTTTGCTTCCCGTGTCTGTGCCA
ACAGCCCCTGAAGTGTCTGAGGAGAGCCACAAGCCCACAGAGGATCCAGCCAGTGTATATGAACAGGATG
ACTTGAGCGAACAAATGGCAAGTTTGGAAGGGCTAATGAAGCAACTCAACGCCATCACAGGGTCTGCCTT
TTGA

Translation (1447 aa):
MENSLGCVWVPKLAFVLFGASLLSAHLQVTGFQIKPFTSLHFVSEPSDAVTMRGGNVLLNCSAESDRGVP
VIKWKKDGLILALGMDDRKQQLPNGSLLIQNILHSRHHKPDEGLYQCEASLADSGSIISRTAKVTVAGPL
RFLSQTESITAFMGDTVLLKCEVIGEPMPTIHWQKNQQDLNPLPGDSRVVVLPSGALQISRLQPGDSGVY
RCSARNPASIRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGKDAVLECCVSGYPPPSFTWLRGEEVI
QLRSKKYSLLGGSNLLISNVTDDDSGTYTCVVTYKNENISASAELTVLVPPWFLNHPSNLYAYESMDIEF
ECAVSGKPVPTVNWMKNGDVVIPSDYFQIVGGSNLRILGVVKSDEGFYQCVAENEAGNAQSSAQLIVPKP
AIPSSSILPSAPRDVLPVLVSSRFVRLSWRPPAEAKGNIQTFTVFFSREGDNRERALNTTQPGSLQLTVG
NLKPEAMYTFRVVAYNEWGPGESSQPIKVATQPELQVPGPVENLHAVSTSPTSILITWEPPAYANGPVQG
YRLFCTEVSTGKEQNIEVDGLSYKLEGLKKFTEYTLRFLAYNRYGPGVSTDDITVVTLSDVPSAPPQNIS
LEVVNSRSIKVSWLPPPSGTQNGFITGYKIRHRKTTRRGEMETLEPNNLWYLFTGLEKGSQYSFQVSAMT
VNGTGPPSNWYTAETPENDLDESQVPDQPSSLHVRPQTNCIIMSWTPPLNPNIVVRGYIIGYGVGSPYAE
TVRVDSKQRYYSIERLESSSHYVISLKAFNNAGEGVPLYESATTRSITDPTDPVDYYPLLDDFPTSGPDV
STPMLPPVGVQAVALTHEAVRVSWADNSVPKNQKTSDVRLYTVRWRTSFSASAKYKSEDTTSLSYTATGL
KPNTMYEFSVMVTKNRRSSTWSMTAHATTYEAAPTSAPKDLTVITREGKPRAVIVSWQPPLEANGKITAY
ILFYTLDKNIPIDDWIMETISGDRLTHQIMDLSLDTMYYFRIQARNVKGVGPLSDPILFRTLKVEHPDKM
ANDQGRHGDGGYWPVDTNLIDRSTLNEPPIGQMHPPHGSVTPQKNSNLLVITVVTVGVLTVLVVVIVAVI
CTRRSSAQQRKKRATHSVSKRKGSQKDLRPPDLWIHHEEMEMKNIEKPTGTDPAGRDSPIQSCQDLTPVS
HSQSETQMGSKSASHSGQDTEDAGSSMSTLERSLAARRATRAKLMIPMEAQSSNPAVVSAIPVPTLESAQ
YPGILPSPTCGYPHPQFTLRPVPFPTLSVDRGFGAGRTQSVSEGPTTQQQPMLPPAQPEHPSSEEAPSRT
IPTACVRPTHPLRSFANPLLPPPMSAIEPKVPYTPLLSQPGPTLPKTHVKTASLGLAGKARSPLLPVSVP
TAPEVSEESHKPTEDPASVYEQDDLSEQMASLEGLMKQLNAITGSAF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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