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Report for CCDS19817.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19817.1 Public Mus musculus 5 Mad1l1 23 108 98 CCDS HistoryNCBI Gene:17120Re-query CCDS DB by CCDS ID:19817.1Re-query CCDS DB by GeneID:17120See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19817.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000031534.8 ENSMUSP00000031534.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000031534.8Link to Ensembl Protein Viewer:ENSMUSP00000031534.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000031534Re-query CCDS DB by Protein ID:ENSMUSP00000031534
Original member Current member NCBI NM_001359025.1 NP_001345954.1 Accepted alive Link to Nucleotide Sequence:NM_001359025.1Link to Protein Sequence:NP_001345954.1Re-query CCDS DB by Nucleotide ID:NM_001359025Re-query CCDS DB by Protein ID:NP_001345954Link to BLAST:NP_001345954.1
Original member Current member NCBI NM_010752.3 NP_034882.2 Accepted alive Link to Nucleotide Sequence:NM_010752.3Link to Protein Sequence:NP_034882.2Re-query CCDS DB by Nucleotide ID:NM_010752Re-query CCDS DB by Protein ID:NP_034882Link to BLAST:NP_034882.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001345954.1 717 Q9WTX8-1 717 100% 0 0
NP_034882.2 717 Q9WTX8-1 717 100% 0 0

Chromosomal Locations for CCDS 19817.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 140009116 140009274 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140065814 140066004 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140088630 140088837 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140105515 140105605 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140117237 140117325 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140132769 140132825 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140143920 140144060 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140193914 140194058 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140261498 140261584 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140295787 140295848 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140300215 140300329 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140300434 140300564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140302915 140302996 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140303573 140303697 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140307591 140307770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140310595 140310735 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140314990 140315139 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2154 nt):
ATGGAAGACCTCGGGGAGAACACCACAGTCCTCTCCTCCCTGAGATCTCTGAACAACTTCATTTCTCAGC
GAATGGAGGGAACATCAGGCCTGGATGTGTCCACGTCTGCCTCAGGGTCCCTACAGAAGCAGTATGAGTA
TCACATGCAGCTGGAGGAAAGAGCAGAGCAGATCCGCTCAAAGTCCTACCTCATCCAAGTGGAGCGGGAG
AAGATGCAGATGGAGCTGAGCCACAAGAGAGCCCGAGTGGAGCTGGAGAGAGCAGCCAGCACCAATGCCA
GGAACTACGAGCGCGAGGTAGATCGCAACCAGGAGCTCCTGGCACGCATTCGACAGCTCCAGGAGTGTGA
GGCCACAGCAGAAGAGAAGATGCGGGAGCAGCTGGAGCGCCACAGGCTGTGCAAGCAAAACCTGGATGCT
GTCAGTCAGCAGCTGCGGGAACAGGAGGACAGCCTGGCTTCGGCCAGGGAGATGATTAGTTCATTGAAGG
GGCGTGTCTCGGAGCTGCAGTTGAGTGCCATGGACCAGAAGGTACAGGTCAAGCGGCTGGAGTCTGAAAA
GCAGGAGCTGAAGGAGCAGCTGGAGCTGCAGCAGCGGAAATGGCAAGAGGCAAATCAGAAGATCCAGGAG
CTGCAGGCCAGTCAAGATGAGAGAGCTGAGCATGAGCAGAAGATTAAGGACCTGGAGCAGAAGCTGTGTC
TACAAGAGCAGGATGCAGCTGTGGTGAAGAGCATGAAGTCTGAGCTGATGCGGATGCCCAGGATGGAGCG
TGAGCTGAAGAGGCTGCATGAAGAGAACACTCATCTAAGGGAGATGAAGGAGACCAATGGGCTGCTCACA
GAGGAGCTGGAAGGTCTGCAGAGGAAACTGAGCCGGCAGGAGAAGATGCAGGAGGCTCTGGTTGACCTGG
AGTTGGAAAAGGAGAAGCTACTTGCAAAGCTGCAGAGCTGGGAGAACCTGGACCAGACCATGGGCTTGAA
TCTCAGGACTCCAGAGGACCTTTCTAGGTTCGTGGTTGAGCTACAGCAGCGAGAGCTCACCCTGAAGGAG
AAGAATAACAGCATCACCAGCAGTGCCCGGGGTCTGGAGAAGGTCCAGCAGCAGCTCCAGGATGAGGTCC
GGCAGGCCAATGCACAGCTGCTGGAGGAGCGGAAAAAGAGGGAGACACATGAGGCACTTGCCCGAAGGCT
CCAGAAGCGCAATGCATTGCTGACCAAGGAGAGAGATGGCATGCGTGCCATCCTGGGATCCTACGACAGT
GAGCTGACCCAAACTGAGTACTCAACCCAGCTGACACAGCGCCTGTGGGAGGCCGAGGACATGGTTCAGA
AGGTACATGCCCACAGCTCGGAGATGGAGGCTCAGCTGTCTCAGGCCCTGGAGGAGCTTGGGGTTCAGAA
GCAGAGAGCTGACACGCTGGAGATGGAGTTGAAGATGCTGAAGGCCCAGACAAGCTCAGCTGAATCTAGC
TTCTCATTCTGCAAAGAGGAGGTGGATGCACTCAGGTTGAAGGTGGAGGAGCTGGAGGGTGAGCGGAGCC
GTCTGGAACAGGAAAAGCAGGTGCTGGAGATGCAGATGGAGAAACTAACCCTACAGGGTGACTACAACCA
GAGTCGAACCAAAGTGCTACACATGAGCCTTAACCCAATCAGCATGGCCAGGCAACGCCAGCATGAGGAC
CATGACCGGCTGCAGGAGGAATGTGAGCGCTTACGGGGACTTGTGCATGCCCTGGAGAGAGGGGGCCCCA
TCCCTGCTGACCTGGAGGCTGCCTCCAGTCTGCCCTCATCAAAGGAGGTGGCAGAGCTGCGGAAGCAGGT
GGAAAGTGCTGAGCTGAAGAACCAGCGGCTGAAGGAGGTTTTCCAGACCAAGATCCAGGAGTTCCGCAAA
GTTTGCTACACGCTGACCGGCTACCAGATTGACGTGACCACGGAGAGCCAATACCGCCTCACCTCCCGAT
ACGCTGAGCACCAGACGGACTGCCTCATCTTCAAGGCCACAGGACCCTCGGGCTCCAAGATGCAGCTGCT
GGAGACAGAGTTCTCACGGTCTGTGCCTGAGCTCATTGAACTGCACTTGCTGCAGCAGGACAGCATCCCT
GCCTTCCTCAGTGCGCTCACCATAGAGCTGTTCAGCCGCCAGACCTCTATCTAG

Translation (717 aa):
MEDLGENTTVLSSLRSLNNFISQRMEGTSGLDVSTSASGSLQKQYEYHMQLEERAEQIRSKSYLIQVERE
KMQMELSHKRARVELERAASTNARNYEREVDRNQELLARIRQLQECEATAEEKMREQLERHRLCKQNLDA
VSQQLREQEDSLASAREMISSLKGRVSELQLSAMDQKVQVKRLESEKQELKEQLELQQRKWQEANQKIQE
LQASQDERAEHEQKIKDLEQKLCLQEQDAAVVKSMKSELMRMPRMERELKRLHEENTHLREMKETNGLLT
EELEGLQRKLSRQEKMQEALVDLELEKEKLLAKLQSWENLDQTMGLNLRTPEDLSRFVVELQQRELTLKE
KNNSITSSARGLEKVQQQLQDEVRQANAQLLEERKKRETHEALARRLQKRNALLTKERDGMRAILGSYDS
ELTQTEYSTQLTQRLWEAEDMVQKVHAHSSEMEAQLSQALEELGVQKQRADTLEMELKMLKAQTSSAESS
FSFCKEEVDALRLKVEELEGERSRLEQEKQVLEMQMEKLTLQGDYNQSRTKVLHMSLNPISMARQRQHED
HDRLQEECERLRGLVHALERGGPIPADLEAASSLPSSKEVAELRKQVESAELKNQRLKEVFQTKIQEFRK
VCYTLTGYQIDVTTESQYRLTSRYAEHQTDCLIFKATGPSGSKMQLLETEFSRSVPELIELHLLQQDSIP
AFLSALTIELFSRQTSI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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