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Report for CCDS28655.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28655.2 Public Mus musculus 17 Atf6b 23 108 98 CCDS HistoryNCBI Gene:12915Re-query CCDS DB by CCDS ID:28655.2See the combined annotation on chromosome 17 in Sequence Viewer

Public Note for CCDS 28655.1
The coding region has been updated to extend the N-terminus to one that is more supported by the available transcript and conservation data.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 28655.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000015605.14 ENSMUSP00000015605.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000015605.14Link to Ensembl Protein Viewer:ENSMUSP00000015605.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000015605Re-query CCDS DB by Protein ID:ENSMUSP00000015605
Original member Current member NCBI NM_017406.4 NP_059102.2 Accepted alive Link to Nucleotide Sequence:NM_017406.4Link to Protein Sequence:NP_059102.2Re-query CCDS DB by Nucleotide ID:NM_017406Re-query CCDS DB by Protein ID:NP_059102Link to BLAST:NP_059102.2

Chromosomal Locations for CCDS 28655.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 34647214 34647316 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34647660 34647739 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34648219 34648297 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34648577 34648668 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34649118 34649253 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34650301 34650386 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34650500 34650635 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34650720 34650851 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34650986 34651119 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34651562 34651747 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34651830 34651921 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34652648 34652827 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34652989 34653096 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34653214 34653295 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34653502 34653572 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34653704 34653815 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34653921 34654005 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34654471 34654697 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2121 nt):
ATGGTGGGGGGTGGGGGGAAGATGGCGGAGCTGATGCTCCTCAGTGAGATCGCCGACCCGACGCGCTTCT
TCACCGACAACCTGCTGAGTCCGGAGGACTGGGACAGCACCTTGTACAGTGGCCTGGATGAAGTGGCCGA
GGAGCAGGCACAGTTGTTCCGTTGCGTGGAGCAGGATGTCCCGTTTGACAGCAGCTCTCTGGATGTGGGG
ATGGATGTCAGCCCCCCTGAGCCCCCTTGGGACCCTCTACCCATCTTCCCAGATCTTCAGGTGAAGTCCG
AGCCATCCTCTCCCTGCTCGTCCTCCTCCCTCAGCTCAGAGTCCTCACATCTTTCCACAGAGCCCCCCAG
CCAGGTCCCTGGTGTAGGCGAGGTGCTGCATGTGAAGATGGAGTCCCTGGCACCCCCACTCTGCCTGCTG
GGGGATGATCCAGCATCCCCCTTTGAAACGGTCCAGATCACTGTGGGCTCTGCCTCTGATGATCTTTCAG
ATATCCAGACCAAGCTGGAACCTGCCTCTCCGTCTTCTTCTGTCCACTCTGAGGCCTCCTTGCTGTCAGC
AGACTCTCCCAGTCAGCCTTTTATAGGAGAGGAGGTTCTGGAAGTGAAGACAGAGTCTCCGTCCCCTCCA
GGGTGCCTCCTGTGGGATGTCCCAGCCTCTTCGCTCGGAGCTGTCCAGATCAGCATGGGTCCATCCCCTG
ATAGTTCCTCAGGGAAAGCTCCGGCCACTCGGAAGCCTCCACTGCAGCCCAAGCCTGTGGTACTAACCAC
AGTTCCGGTGCCACCTAGAGCTGGGCCTACCAGCGCTGCCGTCCTCCTGCAACCCCTGGTCCAGCAGCCT
GCGGTGTCCCCAGTGGTCCTCATCCAAGGTGCTATCCGAGTCCAGCCTGAAGGGCCAGCTCCCGCAGCTC
CCCGGCCTGAGAGGAAGAGCATTGTTCCAGCCCCTATGCCGGGGAACTCCTGCCCGCCTGAAGTGGATGC
AAAGCTGTTGAAGCGGCAGCAGCGGATGATCAAGAATCGAGAGTCGGCCTGCCAGTCCCGCCGCAAGAAG
AAAGAGTACCTGCAAGGCCTGGAGGCCCGGCTGCAGGCTGTGCTGGCCGACAACCAGCAGCTGCGCAGGG
AGAACGCTGCCCTCCGGCGGCGGCTGGAGGCCCTGCTGGCAGAGAACAGCGGGCTCAAGCTGGGGTCTGG
AAACAGGAAGGTTGTCTGCATCATGGTCTTCCTTCTCTTCATTGCCTTCAACTTTGGGCCTGTGAGCATC
AGCGAGCCGCCTCCAGCTCCCATGTCTCCTCGGATGAGCAGGGAGGAACCTCGACCCCAGAGGCACCTGC
TGGGCTTCTCAGAACCAGGGCCAGCTCATGGCATGGAACCCCTTCGGGAAGCCGCCCAGAGCCCCGGGGA
GCAGCAGCCCAGCTCTGCAGGCAGGCCCAGCTTCAGAAACCTGACGGCCTTCCCCGGGGGAGCCAAGGAG
CTGCTGCTGAGAGACCTGGACCAGCTCTTCCTCTCCTCAGACTGTCGCCATTTCAACCGAACTGAGTCTC
TGAGGCTTGCTGATGAGCTGAGTGGCTGGGTCCAACGTCACCAGAGAGGTCGACGGAAGATACCTCACAG
GGCCCAGGAGAGACAGAAGTCTCAGCTACGGAAGAAGTCTCCTCCAGTGAAACCTGTCCCCACCCAACCT
CCAGGACCCCCTGAAAGGGACCCCGTGGGCCAGCTGCAGCTCTACCGCCACCCCGGCCGCTCGCAGCCGG
AGTTTCTAGACGCAATTGACCGGAGGGAGGATACCTTCTATGTTGTCTCCTTCCGAAGGGACCACCTGCT
GCTCCCAGCCATCAGCCACAACAAGACATCCAGGCCCAAGATGTCGCTGGTGATGCCAGCCATGGCCCCC
AATGAGACCGTGTCAGGCCGGGGCCCCCCAGGGGACTATGAGGAGATGATGCAGATCGAGTGTGAGGTCA
TGGACACCAGGGTGATTCACATCAAGACCTCTACGGTGCCCCCCTCGCTCCGGAAGCAGCCGTCCCCATC
CCCGGGCAATACCACAGGTGGCCCCTTGCCAGGCTCCGCAGCTAGTCCTGCCCATCAGGCCTCCCAGCCC
CTCTACCTCAATCACCCCTGA

Translation (706 aa):
MVGGGGKMAELMLLSEIADPTRFFTDNLLSPEDWDSTLYSGLDEVAEEQAQLFRCVEQDVPFDSSSLDVG
MDVSPPEPPWDPLPIFPDLQVKSEPSSPCSSSSLSSESSHLSTEPPSQVPGVGEVLHVKMESLAPPLCLL
GDDPASPFETVQITVGSASDDLSDIQTKLEPASPSSSVHSEASLLSADSPSQPFIGEEVLEVKTESPSPP
GCLLWDVPASSLGAVQISMGPSPDSSSGKAPATRKPPLQPKPVVLTTVPVPPRAGPTSAAVLLQPLVQQP
AVSPVVLIQGAIRVQPEGPAPAAPRPERKSIVPAPMPGNSCPPEVDAKLLKRQQRMIKNRESACQSRRKK
KEYLQGLEARLQAVLADNQQLRRENAALRRRLEALLAENSGLKLGSGNRKVVCIMVFLLFIAFNFGPVSI
SEPPPAPMSPRMSREEPRPQRHLLGFSEPGPAHGMEPLREAAQSPGEQQPSSAGRPSFRNLTAFPGGAKE
LLLRDLDQLFLSSDCRHFNRTESLRLADELSGWVQRHQRGRRKIPHRAQERQKSQLRKKSPPVKPVPTQP
PGPPERDPVGQLQLYRHPGRSQPEFLDAIDRREDTFYVVSFRRDHLLLPAISHNKTSRPKMSLVMPAMAP
NETVSGRGPPGDYEEMMQIECEVMDTRVIHIKTSTVPPSLRKQPSPSPGNTTGGPLPGSAASPAHQASQP
LYLNHP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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