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Report for CCDS18265.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18265.1 Public Mus musculus 4 Tnc 23 108 98 CCDS HistoryNCBI Gene:21923Re-query CCDS DB by CCDS ID:18265.1Re-query CCDS DB by GeneID:21923See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18265.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000030056.11 ENSMUSP00000030056.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000030056.11Link to Ensembl Protein Viewer:ENSMUSP00000030056.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000030056Re-query CCDS DB by Protein ID:ENSMUSP00000030056
Original member Current member EBI ENSMUST00000107377.9 ENSMUSP00000103000.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107377.9Link to Ensembl Protein Viewer:ENSMUSP00000103000.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000107377Re-query CCDS DB by Protein ID:ENSMUSP00000103000
Original member Current member NCBI NM_011607.3 NP_035737.2 Accepted alive Link to Nucleotide Sequence:NM_011607.3Link to Protein Sequence:NP_035737.2Re-query CCDS DB by Nucleotide ID:NM_011607Re-query CCDS DB by Protein ID:NP_035737Link to BLAST:NP_035737.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035737.2 2019 Q80YX1-2 2019 100% 0 0

Chromosomal Locations for CCDS 18265.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 63960433 63960543 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 63961987 63962150 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 63964598 63964759 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 63965584 63965680 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 63966511 63966662 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 63967217 63967349 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 63970314 63970444 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 63971158 63971301 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 63972678 63972797 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 63975202 63975345 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 63976446 63976568 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 63982651 63982923 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 63993027 63993299 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 63995541 63995813 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 63999913 64000185 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 64000698 64000970 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 64006246 64006509 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 64007348 64007437 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 64007682 64007867 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 64008614 64008883 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 64013068 64013224 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 64013929 64014044 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 64014895 64015158 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 64016831 64018240 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 64020144 64020600 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (6060 nt):
ATGGGGGCCGTGACCTGGCTACTGCCAGGCATCTTTCTAGCTTTGTTTGCCCTCACTCCCGAAGGTGGGG
TCCTCAAGAAAATCATCAGGCACAAGCGAGAGAGTGGGCTAAACATGACCCTGCCAGAAGAGAATCAGCC
AGTGGTGTTCAACCATATCTACAACATCAAGTTGCCCATGGGTTCCCAATGCTCAGTGGATCTGGAGTCA
GCGAGTGGGGAGAAAGACCTGACCCCCACGCCAGAGTCCAGTGGGAGCTTCCAGGAACATACAGTGGATG
GGGAAAACCAAATTGTATTCACACACCGCATCAACATCCCCCGCCGGGCCTGTGGCTGTGCTGCAGCTCC
AGATGTGAAGGAGCTCCTGAGCAGGCTGGAGGAGCTGGAGTTGCTGGTATCGTCTCTAAGGGAGCAGTGC
ACCATGGGTACAGGCTGTTGCCTCCAACCTGCAGAAGGTCGTCTGGACACCAGGCCCTTCTGCAGCGGAC
GGGGCAACTTCAGTGCAGAAGGCTGCGGCTGTGTCTGTGAACCAGGCTGGAAAGGCCCCAACTGCTCTGA
GCCTGACTGCCCTGGGAACTGTAATCTCAGAGGCCAGTGCCTTGACGGCCAGTGTATCTGTGACGAGGGT
TTCACTGGGGAAGACTGCAGCCAGCTGGCCTGTCCGAACGACTGCAATGACCAGGGCAGGTGTGTGAACG
GGGTCTGTGTGTGCTTCGAAGGCTATGCCGGCCCTGACTGTGGCCTGGAAGTCTGCCCAGTGCCCTGCAG
CGAGGAACACGGGATGTGTGTGGATGGCAGGTGTGTGTGCAAAGATGGCTTTGCGGGTGAGGACTGCAAC
GAGCCCCTTTGCCTCAACAACTGCTACAATCGTGGGCGGTGTGTGGAGAACGAGTGTGTCTGCGACGAGG
GCTTCACTGGCGAGGACTGCAGTGAGCTCATTTGCCCCAACGACTGCTTCGACCGCGGTCGCTGCATCAA
TGGCACCTGCTACTGTGAAGAAGGTTTCACGGGCGAAGACTGCGGTGAGCTCACCTGCCCCAACGACTGT
CAGGGCCGTGGCCAGTGTGAGGAGGGACAGTGTGTTTGCAACGAGGGCTTTGCAGGAGCAGACTGCAGTG
AAAAGCGGTGTCCCGCCGATTGTCACCACCGTGGCCGCTGCCTCAACGGGCAGTGTGAGTGTGACGATGG
GTTCACAGGGGCTGACTGTGGGGATCTCCAGTGTCCCAATGGCTGCAGTGGGCATGGCCGTTGTGTCAAC
GGGCAGTGCGTGTGTGACGAGGGCTATACCGGAGAAGACTGTAGCCAGCGGCGATGCCCCAATGACTGTC
ACAACCGGGGTCTCTGCGTACAGGGCAAGTGCATATGTGAACAAGGCTTCAAGGGCTTTGACTGTAGTGA
GATGAGCTGTCCCAATGACTGCCACCAACATGGCCGCTGTGTGAATGGCATGTGTATCTGTGATGACGAC
TACACTGGGGAAGACTGCAGAGACCGGCGCTGTCCCCGGGACTGTAGCCAGCGGGGGCGCTGTGTAGACG
GACAGTGCATCTGTGAGGATGGCTTCACTGGCCCTGACTGTGCTGAGCTTTCCTGCCCCAGTGACTGCCA
CGGCCATGGCCGCTGTGTGAATGGCCAATGCATCTGCCACGAGGGCTTCACTGGCAAAGACTGCAAAGAG
CAAAGGTGCCCCAGTGATTGCCATGGCCAAGGCCGCTGTGAGGACGGCCAGTGTATCTGCCATGAGGGCT
TTACGGGCCTGGACTGTGGGCAGCGCTCCTGTCCCAATGACTGCAGCAACCAAGGACAATGTGTGTCAGG
CCGCTGCATCTGCAATGAAGGTTACACAGGGATAGACTGCTCTGAGGTGTCCCCTCCCAAAGACCTTATT
GTGACAGAAGTAACAGAGGAGACTGTAAATCTGGCATGGGACAATGAGATGCGGGTCACTGAGTACCTCA
TTATGTACACACCCACCCATGCTGATGGCCTAGAGATGCAGTTCCGTGTGCCTGGGGACCAGACATCCAC
CACCATTCGGGAGCTGGAACCAGGGGTGGAGTACTTCATTCGTGTGTTCGCCATCTTGGAAAACAAGAGG
AGCATCCCTGTCAGTGCCAGGGTTGCCACCTATTTGCCTGCACCTGAAGGTCTAAAATTCAAGTCTATCA
AGGAGACATCTGTGGAAGTAGAGTGGGATCCTCTAGACATTGCTTTCGAAACATGGGAGATCATTTTCCG
AAATATGAACAAAGAAGATGAGGGAGAGATCACAAAAAGTCTGAGGAGACCAGAGACCTCCTACCGCCAA
ACTGGCCTTGCTCCTGGCCAAGAGTATGAAATATCTCTGCACATTGTGAAAAACAACACCCGAGGCCCCG
GCTTGAAGAAAGTAACCACAACCCGCCTGGATGCCCCCAGCCATATTGAGGTGAAAGATGTCACAGACAC
CACAGCACTGATCACCTGGTTCAAGCCCTTGGCTGAAATTGATAGCATTGAGCTCTCCTATGGCATCAAG
GATGTACCTGGAGACCGTACCACCATCGACCTCACACACGAAGACAACCAGTACTCCATCGGGAACCTGA
GACCTGACACGGAGTATGAGGTGTCCCTCATCTCCCGCAGAGTGGACATGGCAAGCAACCCTGCCAAAGA
GACCTTCATCACAGGCCTGGATGCTCCCAGGAATCTCCGCCGTGTCTCACAGACAGACAACAGCATCACC
TTGGAGTGGAGGAACGTCAAGGCAGACATCGACAGTTACAGAATTAAGTATGCCCCTATCTCTGGAGGTG
ACCATGCTGAGATAGATGTTCCAAAGAGCCAGCAAGCCACAACCAAAACCACACTCACAGGTCTAAGGCC
CGGAACTGAATATGGGATTGGTGTTTCTGCTGTCAAGGGAGACAAGGAGAGTGATCCAGCAACCATCAAT
GCGGCCACAGAAATTGATGCACCCAAGGACTTACGGGTGTCTGAAACCACACAAGACAGTCTGACGTTTT
TCTGGACGACACCCCTGGCCAAGTTTGATCGTTACCGCCTCAACTACAGCCTCCCCACAGGCCAGTCGAT
GGAAGTCCAGCTGCCAAAGGATGCCACCTCCCATGTCCTGACAGACCTGGAGCCAGGGCAAGAATACACT
GTTCTCCTCATTGCTGAGAAGGGCAGACACAAGAGCAAGCCTGCACGTGTGAAGGCATCCACGGAAGAAG
TGCCTTCCCTGGAAAATCTCACTGTGACTGAGGCCGGCTGGGATGGCCTCAGACTCAACTGGACTGCAGA
TGACCTGGCCTATGAGTACTTTGTCATTCAGGTACAGGAAGCCAACAATGTGGAGACTGCTCACAACTTC
ACAGTACCTGGTAACCTCCGGGCTGCAGACATCCCAGGCCTCAAGGTTGCCACTTCTTATAGAGTCTCCA
TCTATGGGGTAGCCCGGGGCTATAGAACACCAGTGCTCTCTGCCGAGACCTCCACAGGGACAACTCCCAA
TCTGGGAGAGGTCACTGTGGCCGAGGTGGGCTGGGATGCCCTCACGCTCAACTGGACTGCTCCAGAAGGA
GCCTATAAGAACTTTTTCATTCAGGTGCTAGAGGCTGACACGACCCAGACTGTCCAGAACCTCACAGTCC
CAGGAGGACTGAGGTCAGTGGACCTGCCTGGGCTCAAAGCAGCCACCCGCTACTACATCACCCTTCGAGG
GGTCACCCAGGACTTCGGCACGGCCCCTCTCTCTGTTGAGGTCTTGACAGAGGATCTCCCTCAGCTGGGA
GGCTTGTCTGTGACTGAGGTCAGCTGGGACGGCCTCACACTCAACTGGACCACAGATGACCTGGCCTATA
AGCACTTTGTCGTTCAGGTGCAGGAGGCCAACAATGTGGAGGCCGCTCAGAACCTCACGGTACCCGGCAG
CCTCAGAGCTGTGGACATCCCAGGCCTCAAGGCCGACACCCCTTATAGAGTCTCCATCTACGGGGTCATC
CAGGGCTATAGAACACCGATGCTCTCTACTGACGTCTCCACAGCCAGAGAACCTGAAATTGGAAACTTAA
ATGTTTCTGATGTAACTCCTAAGAGCTTCAATCTCTCCTGGACAGCTACCGACGGGATCTTCGACATGTT
TACTATTGAAATTATTGATTCTAATAGGTTGCTGCAAACAGCAGAACATAATATATCTGGTGCTGAACGG
ACTGCCCACATCTCAGGGCTTCCACCTAGTACTGATTTCATTGTCTACCTCTCTGGAATTGCTCCCAGCA
TCCGTACCAAAACCATCAGTACCACGGCTACCACAGAAGCTGAACCGGAAGTTGACAACCTTCTAGTTTC
AGATGCCACTCCAGACGGTTTCCGTCTGTCCTGGACTGCTGATGAAGGGATATTCGACAGTTTTGTTATC
AGGATCAGAGATACCAAAAAGCAATCTGAGCCACAAGAAATATCCCTCCCTTCCCCCGAACGTACCAGGG
ACATAACAGGTCTCAGAGAGGCCACTGAGTACGAAATTGAACTCTATGGAATAAGCCGCGGAAGGCGATC
CCAGCCAGTCAGTGCCATAGCAACAACAGCCATGGGTTCTCCGAAGGAAATCATGTTCTCAGACATCACT
GAAAATGCAGCCACAGTCAGCTGGAGGGCACCTACTGCTCAGGTGGAGAGTTTCCGGATCACTTATGTAC
CTATGACAGGAGGTGCCCCGTCCATGGTGACTGTGGATGGAACAGATACTGAGACCAGGCTGGTGAAGCT
TACCCCGGGTGTAGAGTACCGCGTCAGTGTGATTGCCATGAAGGGATTCGAAGAAAGCGATCCAGTCTCG
GGGACTCTAATCACAGCTCTGGATGGTCCATCTGGTCTTCTGATAGCCAACATCACAGACTCAGAAGCCT
TGGCCATGTGGCAGCCAGCCATTGCCACTGTGGACAGTTATGTCATCTCCTACACAGGGGAGAGAGTGCC
AGAAGTTACACGCACAGTGTCTGGAAATACAGTGGAGTACGAGCTGCATGACCTGGAGCCTGCCACAGAG
TACATCCTGAGTATCTTTGCAGAGAAAGGACAGCAGAAGAGCTCTACCATCGCCACCAAGTTTACCACAG
ACCTCGATTCCCCAAGAGAATTTACAGCTACAGAGGTTCAGTCAGAAACTGCCCTCCTTACCTGGAGACC
TCCCCGAGCATCGGTCACTGGATACCTCCTGGTCTATGAATCTGTGGATGGTACAGTCAAGGAAGTCATT
GTGGGGCCTGACACCACCTCCTACAGCCTGGCAGACCTGAGCCCATCCACCCACTACTCAGCAAGGATCC
AGGCATTGAGTGGGTCCCTGAGGAGCAAGCTGATCCAAACCATCTTCACAACAATTGGACTCCTGTACCC
ATTCCCCAGGGACTGCTCTCAAGCAATGTTGAATGGTGATACTACCTCTGGCCTCTACACCATCTATATA
AATGGTGACAAGACTCAAGCACTGGAAGTCTACTGTGATATGACCTCTGATGGAGGTGGATGGATTGTTT
TCCTGAGACGCAAAAATGGACGTGAGGACTTCTATCGCAACTGGAAGGCCTATGCTGCTGGGTTTGGAGA
CCGCAGAGAAGAATTTTGGCTTGGACTGGATAACCTGAGCAAAATCACAGCCCAAGGGCAGTATGAGCTC
CGGGTGGACCTACAAGACCATGGGGAGTCTGCCTATGCTGTGTACGACAGATTCAGTGTTGGAGATGCCA
AGAGTCGCTACAAGCTGAAGGTAGAAGGATACAGTGGAACAGCAGGTGACTCCATGAACTATCACAATGG
TAGATCCTTCTCCACCTATGACAAGGACACAGACTCAGCCATCACCAACTGTGCCCTGTCCTACAAAGGA
GCTTTCTGGTATAAGAACTGTCATCGTGTCAACCTGATGGGCAGATATGGGGACAATAACCACAGTCAGG
GCGTTAACTGGTTCCATTGGAAGGGCCATGAGTACTCAATCCAGTTTGCTGAGATGAAACTGAGACCCAG
CAACTTCCGAAATCTGGAAGGCAGGCGTAAGCGGGCATAA

Translation (2019 aa):
MGAVTWLLPGIFLALFALTPEGGVLKKIIRHKRESGLNMTLPEENQPVVFNHIYNIKLPMGSQCSVDLES
ASGEKDLTPTPESSGSFQEHTVDGENQIVFTHRINIPRRACGCAAAPDVKELLSRLEELELLVSSLREQC
TMGTGCCLQPAEGRLDTRPFCSGRGNFSAEGCGCVCEPGWKGPNCSEPDCPGNCNLRGQCLDGQCICDEG
FTGEDCSQLACPNDCNDQGRCVNGVCVCFEGYAGPDCGLEVCPVPCSEEHGMCVDGRCVCKDGFAGEDCN
EPLCLNNCYNRGRCVENECVCDEGFTGEDCSELICPNDCFDRGRCINGTCYCEEGFTGEDCGELTCPNDC
QGRGQCEEGQCVCNEGFAGADCSEKRCPADCHHRGRCLNGQCECDDGFTGADCGDLQCPNGCSGHGRCVN
GQCVCDEGYTGEDCSQRRCPNDCHNRGLCVQGKCICEQGFKGFDCSEMSCPNDCHQHGRCVNGMCICDDD
YTGEDCRDRRCPRDCSQRGRCVDGQCICEDGFTGPDCAELSCPSDCHGHGRCVNGQCICHEGFTGKDCKE
QRCPSDCHGQGRCEDGQCICHEGFTGLDCGQRSCPNDCSNQGQCVSGRCICNEGYTGIDCSEVSPPKDLI
VTEVTEETVNLAWDNEMRVTEYLIMYTPTHADGLEMQFRVPGDQTSTTIRELEPGVEYFIRVFAILENKR
SIPVSARVATYLPAPEGLKFKSIKETSVEVEWDPLDIAFETWEIIFRNMNKEDEGEITKSLRRPETSYRQ
TGLAPGQEYEISLHIVKNNTRGPGLKKVTTTRLDAPSHIEVKDVTDTTALITWFKPLAEIDSIELSYGIK
DVPGDRTTIDLTHEDNQYSIGNLRPDTEYEVSLISRRVDMASNPAKETFITGLDAPRNLRRVSQTDNSIT
LEWRNVKADIDSYRIKYAPISGGDHAEIDVPKSQQATTKTTLTGLRPGTEYGIGVSAVKGDKESDPATIN
AATEIDAPKDLRVSETTQDSLTFFWTTPLAKFDRYRLNYSLPTGQSMEVQLPKDATSHVLTDLEPGQEYT
VLLIAEKGRHKSKPARVKASTEEVPSLENLTVTEAGWDGLRLNWTADDLAYEYFVIQVQEANNVETAHNF
TVPGNLRAADIPGLKVATSYRVSIYGVARGYRTPVLSAETSTGTTPNLGEVTVAEVGWDALTLNWTAPEG
AYKNFFIQVLEADTTQTVQNLTVPGGLRSVDLPGLKAATRYYITLRGVTQDFGTAPLSVEVLTEDLPQLG
GLSVTEVSWDGLTLNWTTDDLAYKHFVVQVQEANNVEAAQNLTVPGSLRAVDIPGLKADTPYRVSIYGVI
QGYRTPMLSTDVSTAREPEIGNLNVSDVTPKSFNLSWTATDGIFDMFTIEIIDSNRLLQTAEHNISGAER
TAHISGLPPSTDFIVYLSGIAPSIRTKTISTTATTEAEPEVDNLLVSDATPDGFRLSWTADEGIFDSFVI
RIRDTKKQSEPQEISLPSPERTRDITGLREATEYEIELYGISRGRRSQPVSAIATTAMGSPKEIMFSDIT
ENAATVSWRAPTAQVESFRITYVPMTGGAPSMVTVDGTDTETRLVKLTPGVEYRVSVIAMKGFEESDPVS
GTLITALDGPSGLLIANITDSEALAMWQPAIATVDSYVISYTGERVPEVTRTVSGNTVEYELHDLEPATE
YILSIFAEKGQQKSSTIATKFTTDLDSPREFTATEVQSETALLTWRPPRASVTGYLLVYESVDGTVKEVI
VGPDTTSYSLADLSPSTHYSARIQALSGSLRSKLIQTIFTTIGLLYPFPRDCSQAMLNGDTTSGLYTIYI
NGDKTQALEVYCDMTSDGGGWIVFLRRKNGREDFYRNWKAYAAGFGDRREEFWLGLDNLSKITAQGQYEL
RVDLQDHGESAYAVYDRFSVGDAKSRYKLKVEGYSGTAGDSMNYHNGRSFSTYDKDTDSAITNCALSYKG
AFWYKNCHRVNLMGRYGDNNHSQGVNWFHWKGHEYSIQFAEMKLRPSNFRNLEGRRKRA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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