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Report for CCDS48290.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48290.1 Public Mus musculus 1 Cdk5r2 23 108 98 CCDS HistoryNCBI Gene:12570Re-query CCDS DB by CCDS ID:48290.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48290.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000160379.3 ENSMUSP00000125322.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000160379.3Link to Ensembl Protein Viewer:ENSMUSP00000125322.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000160379Re-query CCDS DB by Protein ID:ENSMUSP00000125322
Original member Current member NCBI NM_009872.3 NP_034002.2 Accepted alive Link to Nucleotide Sequence:NM_009872.3Link to Protein Sequence:NP_034002.2Re-query CCDS DB by Nucleotide ID:NM_009872Re-query CCDS DB by Protein ID:NP_034002Link to BLAST:NP_034002.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034002.2 369 O35926 369 100% 0 0

Chromosomal Locations for CCDS 48290.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 74855098 74856207 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1110 nt):
ATGGGCACGGTGCTGTCGCTTTCCCCTGCTTCCTCGGCCAAGGGCCGGAGGCCGGGAGGGCTGCCGGAGG
AGAAAAAGAAGGCGCCGCCCGCGGGGGACGAGGCGCTGGGGGGCTACGGCGCGCCGCCGGCCGGCAAGGG
CGGCAAAGGCGAGAGCCGGCTCAAACGGCCGTCCGTGCTCATCTCGGCGCTCACCTGGAAGCGCCTAGTG
GCAGCCTCGGCCAAGAAGAAGAAAGGCAGCAAAAAGGTGACGCCCAAGCCAGCGTCCACCGGTCCCGACC
CTCTGGTCCAGCAACGCAACCGCGAGAACCTTCTCCGCAAGGGCCGCGACGGCCCCGACGGTGGCGGAAC
AGCCAAGCCCCTGGCCGTGCCGGTGCCCACGGTGCCCACGACCGCTGCCACCTGCGAGCCCCCGTCGGGG
GGCAGCGCAGCCGCCCCTCCACCAGGCTCAGGCGGGGGAAAGCCGCCGCCGCCGCCACCCCCAGCCCCGC
AGGCGGCACCGCCGGCGCCCGGAGGCTCGCCGCGGCGGGTCATCGTGCAGGCGTCTACCGGCGAGCTGCT
CCGCTGCCTCGGCGACTTCGTGTGCCGACGCTGCTACCGCCTCAAGGAGCTGAGCCCCGGCGAGCTGGTG
GGCTGGTTCCGCGGCGTGGACCGCTCGCTGCTGCTGCAGGGCTGGCAAGACCAGGCCTTCATTACCCCCG
CCAACCTGGTGTTCGTGTACCTGCTGTGCCGGGAGTCGCTTCGTGGGGACGAGCTGGCGTCGGCCGCGGA
ACTGCAGGCCGCCTTCCTCACCTGCCTCTACCTCGCCTACTCCTACATGGGCAACGAGATCTCCTACCCG
CTCAAGCCGTTCCTCGTGGAGCCCGACAAGGAGCGCTTCTGGCAGCGCTGCCTGCGCCTCATCCAGCGGC
TCAGCCCGCAGATGCTGCGACTCAACGCCGACCCCCACTTCTTCACGCAAGTCTTTCAAGACCTCAAGAA
CGAGGGCGAGGCCGCGGCGAGCACCGGGGGTCCACCGAGCGGAAGCAGCGCGTCCACCACCTCCTCCTCG
AGCGCCAGGGACAGCTGCGCGACCGGAGCCAAGCACTGGACTATGAACTTGGACCGCTAG

Translation (369 aa):
MGTVLSLSPASSAKGRRPGGLPEEKKKAPPAGDEALGGYGAPPAGKGGKGESRLKRPSVLISALTWKRLV
AASAKKKKGSKKVTPKPASTGPDPLVQQRNRENLLRKGRDGPDGGGTAKPLAVPVPTVPTTAATCEPPSG
GSAAAPPPGSGGGKPPPPPPPAPQAAPPAPGGSPRRVIVQASTGELLRCLGDFVCRRCYRLKELSPGELV
GWFRGVDRSLLLQGWQDQAFITPANLVFVYLLCRESLRGDELASAAELQAAFLTCLYLAYSYMGNEISYP
LKPFLVEPDKERFWQRCLRLIQRLSPQMLRLNADPHFFTQVFQDLKNEGEAAASTGGPPSGSSASTTSSS
SARDSCATGAKHWTMNLDR


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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