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Report for CCDS39141.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39141.1 Public Mus musculus 5 Afm 23 108 98 CCDS HistoryNCBI Gene:280662Re-query CCDS DB by CCDS ID:39141.1Re-query CCDS DB by GeneID:280662See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39141.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000113179.8 ENSMUSP00000108804.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000113179.8Link to Ensembl Protein Viewer:ENSMUSP00000108804.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000113179Re-query CCDS DB by Protein ID:ENSMUSP00000108804
Original member NCBI NM_145146.2 NP_660128.2 Updated not alive Link to Nucleotide Sequence:NM_145146.2Link to Protein Sequence:NP_660128.2Re-query CCDS DB by Nucleotide ID:NM_145146Re-query CCDS DB by Protein ID:NP_660128
Current member NCBI NM_145146.3 NP_660128.2 Accepted alive Link to Nucleotide Sequence:NM_145146.3Link to Protein Sequence:NP_660128.2Re-query CCDS DB by Nucleotide ID:NM_145146Re-query CCDS DB by Protein ID:NP_660128Link to BLAST:NP_660128.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_660128.2 608 O89020-1 608 100% 0 0

Chromosomal Locations for CCDS 39141.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 90518992 90519079 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 90521904 90521952 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 90522159 90522291 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 90523731 90523942 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 90524790 90524922 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 90525506 90525603 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 90526344 90526473 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 90531492 90531706 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 90545387 90545519 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 90547827 90547924 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 90548742 90548874 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 90550163 90550386 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 90551345 90551477 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 90552545 90552592 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1827 nt):
ATGAGACACTTAAAACTTACAGGTTTTATTTTTTTCCTGTTGCCTTTGACTGAATCCCTAGCCCTACCCA
CAAAGCCTCAGGACGTAGATCATTTCAATGCTACCCAGAAATTCATAGATGAGAACACGACATACCTGGC
CATCATCGCGTTTTCCCAGTATGTCCAGGAAGCATCCTTTGATGAGGTGGAAACGCTGGTGAAAGTCATG
CTGGATTACAGGGATAGGTGCTGGGCTGACAACACACTTCCAGAGTGTTCAAAGACAGCTAATGACGCTA
TCCAGGACATGTTATGTGACATGGAGGGACTGCCGCAGAAGCACAACTTTTCTCATTGCTGCGGGAAAGC
CGGCTTTCCAAGAAGACTCTGTTTCTTCTACAACAAGAAAGCTAATGTAGGATTCTTGCCCCCTTTCCCC
ACTCTGGATCCAGAAGAGAAATGCCAAGCTTATAAAAATAACAGTGAATCTTTTCTACACCTCTATATGT
ATGAGGTTGCCAGAAGGAACCCCTTTGTCTTCGCCCCCGTTCTTCTAGCCGTGGCTGCTTGGTTTGAGGA
GGCAGCGACCACATGTTGTGAACAGCAACAGAAAGCCACCTGCTTTCAAGCCAAGGCAGCTCCCATCACA
CAATATTTAAAAGCATCATCTTCTTATCAAAGAAATGTTTGTGGAGCCCTTATAAAGTTTGGACCCAAGG
TCTTAAACTCTATAAACGTTGCTGTATTCAGTAAAAAATTCCCCAAGATTGGATTTAAGGACCTTACCAC
CCTCTTAGAAGATGTTTCTTCCATGTATGAAGGATGCTGTGAAGGAGATGTTGTGCACTGCATCCGAAGC
CAGAGCCAGGTTGTGAACCATATTTGTTCAAAACAAGATTCCATCTCAAGTAAAATCAAAGTGTGCTGCG
AAAAGAAGACCCTAGAACGTGAAGCCTGTATAATTAATGCAAATAAAGACGACAGACCGGAGGGCTTATC
TCTCAGAGAAGCCAAATTCACTGAGAGCGAAAATGTGTGTCAAGAACGAGATTCTGACCCGGACAAGTTC
TTTGCTGAGTTTATTTATGAATACTCCAGGAGACATCCTGACCTGTCTACACCAGAGCTCCTAAGAATTA
CTAAAGTGTATATGGACTTCTTAGAAGACTGCTGCAGCAGAGAAAACCCAGCAGGTTGTTACCGCCATGT
GGAGGATAAATTCAATGAGACAACTCAGCGAAGCCTTGCAATGGTGCAGCAGGAGTGCAAACAGTTCCAG
GAGCTGGGGAAGGACACTCTGCAGCGCCATTTCCTTGTCAAGTTCACCAAGGCAGCCCCTCAGCTCCCCA
TGGAAGAACTGGTCTCCCTTAGTAAGGAAATGGTGGCAGCTCTGACAACCTGTTGCACTCTCAGTGACGA
GTTCGCCTGCGTTGACAACTTGGCAGATTTAGTTCTTGGAGAGTTATGTGGGGTAAATACAAATCGAACT
ATCAATCCTGCTGTGGATCACTGCTGCAAAACAGACTTCGCCTTCAGAAGACACTGCTTTGAGCATCTGA
AAGCTGATACAACGTATGAGCTCCCATCAGTCTCCGCACTTGTATCTGCTTTGCATACAGACTGGTGTCA
GCCTCGTAAGGAGGACCTTCAGAATAAGAAACACAGGTTTCTGGTCAACTTGGTGAAGTGGATGCCAGGG
ATCACGGATGAGGAGTGGCTGTGCTTGTTCACAAAGTTCACTGCTGCCAGGGAGGAGTGCAGCGAAGTGC
AGGAGCCTGAGTCCTGTTTCAGTCCAGAGAGTTCAAAAACTGGTGACGAAAGTCAAGCTACAGAGAAACA
AAGATAA

Translation (608 aa):
MRHLKLTGFIFFLLPLTESLALPTKPQDVDHFNATQKFIDENTTYLAIIAFSQYVQEASFDEVETLVKVM
LDYRDRCWADNTLPECSKTANDAIQDMLCDMEGLPQKHNFSHCCGKAGFPRRLCFFYNKKANVGFLPPFP
TLDPEEKCQAYKNNSESFLHLYMYEVARRNPFVFAPVLLAVAAWFEEAATTCCEQQQKATCFQAKAAPIT
QYLKASSSYQRNVCGALIKFGPKVLNSINVAVFSKKFPKIGFKDLTTLLEDVSSMYEGCCEGDVVHCIRS
QSQVVNHICSKQDSISSKIKVCCEKKTLEREACIINANKDDRPEGLSLREAKFTESENVCQERDSDPDKF
FAEFIYEYSRRHPDLSTPELLRITKVYMDFLEDCCSRENPAGCYRHVEDKFNETTQRSLAMVQQECKQFQ
ELGKDTLQRHFLVKFTKAAPQLPMEELVSLSKEMVAALTTCCTLSDEFACVDNLADLVLGELCGVNTNRT
INPAVDHCCKTDFAFRRHCFEHLKADTTYELPSVSALVSALHTDWCQPRKEDLQNKKHRFLVNLVKWMPG
ITDEEWLCLFTKFTAAREECSEVQEPESCFSPESSKTGDESQATEKQR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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