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Report for CCDS36075.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36075.1 Public Mus musculus 10 Srgap1 23 108 98 CCDS HistoryNCBI Gene:117600Re-query CCDS DB by CCDS ID:36075.1Re-query CCDS DB by GeneID:117600See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 36075.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000081688.12 ENSMUSP00000080389.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000081688.12Link to Ensembl Protein Viewer:ENSMUSP00000080389.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000081688Re-query CCDS DB by Protein ID:ENSMUSP00000080389
Original member Current member NCBI NM_001081037.2 NP_001074506.1 Accepted alive Link to Nucleotide Sequence:NM_001081037.2Link to Protein Sequence:NP_001074506.1Re-query CCDS DB by Nucleotide ID:NM_001081037Re-query CCDS DB by Protein ID:NP_001074506Link to BLAST:NP_001074506.1

Chromosomal Locations for CCDS 36075.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 121785398 121785775 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 121792186 121792525 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 121792655 121792789 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 121794607 121794787 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 121800825 121800904 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 121804816 121805040 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 121807861 121807966 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 121823037 121823171 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 121825416 121825493 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 121825634 121825694 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 121829227 121829329 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 121831885 121831912 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 121840030 121840114 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 121840765 121840962 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 121853649 121853750 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 121855305 121855526 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 121869717 121869845 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 121870328 121870510 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 121896683 121896745 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 121925816 121925978 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 121931314 121931509 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 122047127 122047193 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3258 nt):
ATGTCCACCCCGAGCAGATTCAAGAAGGACAAAGAGATCATAGCCGAGTATGAAAGTCAAGTCAAAGAAA
TCCGAGCCCAGCTGGTAGAACAACAAAAATGCCTGGAGCAGCAGACAGAGATGCGAGTTCAGCTGCTCCA
GGACCTACAAGATTTCTTCCGGAAAAAAGCCGAAATTGAGACGGAATATTCTCGGAACCTGGAGAAGCTG
GCAGAAAGGTTCATGGCCAAAACAAGAAGCACTAAGGACCATCAACAGTTCAAGAAAGACCAAAACCTGT
TGTCTCCAGTGAACTGCTGGTATTTGCTCCTGAACCAAGTGAGAAGAGAGAGCAAAGACCACGCCACTTT
GAGTGACATCTATCTGAACAATGTCATCATGCGGTTCATGCAGATAAGCGAGGACTCCACCCGGATGTTT
AAAAAGAGCAAAGAGATTGCGTTCCAGCTTCACGAGGACCTCATGAAGGTTCTGAATGAGCTCTACACGG
TGATGAAAACCTACCACATGTACCACTCAGAGAGCATCAGTGCAGAGAGTAAGCTGAAAGAAGCCGAGAA
ACAAGAGGAGAAGCAGATTGGGAGGTCCGGCGACCCAGTCTTCCACATTAGGCTGGAAGAGAGGCATCAG
AGGCGGAGCTCTGTGAAGAAAATTGAAAAAATGAAGGAAAAGAGACAAGCAAAATATTCAGAAAATAAGC
TGAAATCGATCAAAGCCCGCAACGAGTATCTCCTAACACTTGAAGCAACCAACGCCTCCGTGTTCAAGTA
TTACATCCATGATCTTTCAGACTTAATAGACTGCTGTGATCTCGGCTACCATGCAAGTCTGAACAGAGCC
CTCAGAACGTACCTCTCGGCGGAGTACAACCTTGAAACCTCCAGACACGAAGGCTTAGACATCATTGAAA
ACGCTGTGGACAATTTAGAGCCCAGGAGTGACAAGCAGAGGTTCATGGAGATGTACCCTGCGGCATTCTG
CCCGCCAATGAAATTCGAGTTTCAGTCTCACATGGGTGATGAGGTGTGTCAGGTCAGCGCCCAGCAGCCC
GTCCAGGCGGAGCTCATGCTCAGGAACCAACAGCTGCAGTCCCGACTGGCCACACTCAAGATCGAGAGCG
AGGAGGTCAAGAAAACGACAGAAGCCACCCTCCAGACGATCCAAGATATGGTCACCATTGAGGACTATGA
TGTGTCTGAGTGTTTCCAGCACAGCCGATCCACAGAGTCTGTGAAGTCCACTGTGTCAGAAACCTACCTG
AGTAAACCCAGCATCGCCAAGAGACGAGCCAACCAGCAAGAAACGGAGCAGTTCTACTTCATGAAACTTC
GAGAGTTCCTGGAAGGCAGTAACCTCATCACAAAGCTGCAGGCTAAGCATGACTTGCTGCAGAGGACTCT
TGGAGAAGGCCATAGAGCTGAATATATGACTACAAGGCCTCCAAACGTCCCCCCTAAGCCCCAGAAACAC
AGGAAGTCCAGGCCCCGCTCCCAGTATAATGCTAAGTTGTTTAATGGGGATTTGGAGACATTCGTCAAGG
ACTCAGGCCAGGTTATCCCTCTCATTGTGGAAAGCTGCATCCGATTCATTAATCTCTATGGCCTTCAGCA
CCAGGGGATTTTCAGAGTGTCTGGCTCCCAGGTGGAAGTGAACGATATCAAGAATTCTTTCGAGAGAGGT
GAGAACCCTCTGTCCGATGAGCAGAGCAACCACGATATCAACTCGGTGGCCGGCGTGCTGAAGCTGTACT
TCCGAGGGCTGGAAAACCCCCTCTTTCCTAAGGAAAGGTTTACTGACCTGATTTCCTGTATCAGAATAGA
TAACCTCTATGAGAGGGCGCTCCACATCCGCAAACTCCTCCTGACCTTGCCCAGGTCGGTCCTTATAGTG
ATGAGGTACCTGTTTGCCTTCCTCAATCACCTCTCCCAGTACAGTGACGAGAACATGATGGACCCTTACA
ATCTGGCCATTTGCTTCGGCCCAACACTGATGCCGGTTCCAGAGATACAGGACCAAGTGTCTTGCCAGGC
ACACGTGAACGAGATTGTGAAGACCATCATCATCCATCACGAGACTATTTTCCCAGATGCTAAAGAACTG
GACGGCCCCGTGTATGAGAAATGCATGGCCGGAGGCGACTACTGCGACAGCCCCTACAGTGAGCATGGTA
CATTGGAGGAGGTGGACCAAGACGCCGGCACAGAGCCCCACACCAGTGAAGACGAGTGTGAGCCCATCGA
AGCCATAGCCAAGTTTGACTACGTCGGGCGGTCAGCTAGAGAGCTGTCCTTCAAGAAGGGTGCATCCCTG
CTGCTGTATCACCGAGCCTCCGAGGATTGGTGGGAAGGCAGACACAACGGGATCGATGGCCTTGTGCCTC
ATCAGTACATAGTTGTGCAAGATATGGACGATACATTTTCAGACACGCTGAGCCAAAAGGCCGACAGCGA
AGCCAGCAGCGGGCCAGTCACTGAAGACAAGTCCTCATCCAAGGACATGAACTCCCCGACTGACCGCCAT
TCTGATAGCTATTTAGCCAGACAAAGAAAGAGAGGAGAGCCACCCCCTCCGGGAAGACGTCCCGGCAGGA
CCAGCGATGGCCATTGTCCCCTGCATCCCCCGCATGCTCTGTCTAACTCCTCAATTGATCTGGGATCCCC
AAACCTAGCCAGTCACCCCAGGGGCCTGTTGCAGAACCGTGGCCTCAATAATGACAGTCCTGAGAGGCGG
CGCCGGCCGGGCCACGGCAGCCTGACCAATATCAGCCGGCATGACTCCCTCAAGAAGATCGACAGCCCTC
CTATCCGGAGGTCCACATCATCAGGGCAGTACACAGGCTTCAATGACCACAAGCCACTGGACCCCGAGAC
GATTGCTCAGGATATTGAGGAGACCATGAACACTGCTTTGAACGAACTCCGTGAACTCGAGAGGCAGAGC
ACAGTGAAGCACGCCCCCGATGTCGTGCTAGACACTTTGGAGCAAGTGAAGAACTCGCCCACCCCTGCGA
CTTCCACAGAATCACTCAGCCCACTGCACAATGTCGCCCTCAGGGGCTCAGAGCCACAGATTCGCCGGAG
CACCAGCTCCTCCAGCGAGACAATGAGTACTTTCAAGCCTATGGTGGCGCCCCGGATGGGCGTCCAGCTG
AAGCCCCCAGCCCTTAGGCCAAAGCCTGCTGTTCTTCCAAAAACAAACCCTACGATGGGACCTGCCGCAC
CTTCCCAGGGTCCCACAGACAAGTCTTGCACGATGTAA

Translation (1085 aa):
MSTPSRFKKDKEIIAEYESQVKEIRAQLVEQQKCLEQQTEMRVQLLQDLQDFFRKKAEIETEYSRNLEKL
AERFMAKTRSTKDHQQFKKDQNLLSPVNCWYLLLNQVRRESKDHATLSDIYLNNVIMRFMQISEDSTRMF
KKSKEIAFQLHEDLMKVLNELYTVMKTYHMYHSESISAESKLKEAEKQEEKQIGRSGDPVFHIRLEERHQ
RRSSVKKIEKMKEKRQAKYSENKLKSIKARNEYLLTLEATNASVFKYYIHDLSDLIDCCDLGYHASLNRA
LRTYLSAEYNLETSRHEGLDIIENAVDNLEPRSDKQRFMEMYPAAFCPPMKFEFQSHMGDEVCQVSAQQP
VQAELMLRNQQLQSRLATLKIESEEVKKTTEATLQTIQDMVTIEDYDVSECFQHSRSTESVKSTVSETYL
SKPSIAKRRANQQETEQFYFMKLREFLEGSNLITKLQAKHDLLQRTLGEGHRAEYMTTRPPNVPPKPQKH
RKSRPRSQYNAKLFNGDLETFVKDSGQVIPLIVESCIRFINLYGLQHQGIFRVSGSQVEVNDIKNSFERG
ENPLSDEQSNHDINSVAGVLKLYFRGLENPLFPKERFTDLISCIRIDNLYERALHIRKLLLTLPRSVLIV
MRYLFAFLNHLSQYSDENMMDPYNLAICFGPTLMPVPEIQDQVSCQAHVNEIVKTIIIHHETIFPDAKEL
DGPVYEKCMAGGDYCDSPYSEHGTLEEVDQDAGTEPHTSEDECEPIEAIAKFDYVGRSARELSFKKGASL
LLYHRASEDWWEGRHNGIDGLVPHQYIVVQDMDDTFSDTLSQKADSEASSGPVTEDKSSSKDMNSPTDRH
SDSYLARQRKRGEPPPPGRRPGRTSDGHCPLHPPHALSNSSIDLGSPNLASHPRGLLQNRGLNNDSPERR
RRPGHGSLTNISRHDSLKKIDSPPIRRSTSSGQYTGFNDHKPLDPETIAQDIEETMNTALNELRELERQS
TVKHAPDVVLDTLEQVKNSPTPATSTESLSPLHNVALRGSEPQIRRSTSSSSETMSTFKPMVAPRMGVQL
KPPALRPKPAVLPKTNPTMGPAAPSQGPTDKSCTM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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