NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS51080.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51080.1 Public Mus musculus 3 Mttp 23 108 98 CCDS HistoryNCBI Gene:17777Re-query CCDS DB by CCDS ID:51080.1Re-query CCDS DB by GeneID:17777See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51080.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000098580.5 ENSMUSP00000096179.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000098580.5Link to Ensembl Protein Viewer:ENSMUSP00000096179.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000098580Re-query CCDS DB by Protein ID:ENSMUSP00000096179
Original member Current member NCBI NM_001163457.2 NP_001156929.1 Accepted alive Link to Nucleotide Sequence:NM_001163457.2Link to Protein Sequence:NP_001156929.1Re-query CCDS DB by Nucleotide ID:NM_001163457Re-query CCDS DB by Protein ID:NP_001156929Link to BLAST:NP_001156929.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001156929.1 909 O08601-2 909 100% 0 0

Chromosomal Locations for CCDS 51080.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 138091055 138091229 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 138092579 138092749 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 138094959 138095083 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 138103087 138103314 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 138104667 138104788 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 138104943 138105040 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 138107102 138107310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 138108956 138109168 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 138111644 138111751 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 138112460 138112628 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 138114056 138114213 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 138115136 138115286 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 138116002 138116141 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 138116407 138116523 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 138118313 138118420 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 138123733 138123876 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 138125058 138125245 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 138134000 138134105 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2730 nt):
ATGACAGTCGTGATGGGGAAATGTCAAGTATCAGATGGACGCCAGCTTTTGTTATTTTATGCCGTGCTGT
TACTCTTTCCTACTTTGTGTGCCATGCAAAATAGCGGTCACACAACTGGCCTCTCATTAAATAATGAGCG
GCTATACAAGCTCACGTACTCCACTGAAGTGTTTCTTGATGGGGGCAAAGGAAAACCGCAAGACAGCGTG
GGCTACAAAATCTCATCTGATGTGGACGTTGTGTTACTGTGGAGGAATCCTGATGGTGATGATGATCAAG
TGATCCAAGTCACGATAACAGCTGTTAACGTTGAAAATGCGGGTCAACAGAGAGGCGAGAAGAGCATCTT
CCAGGGCAAAAGTACACCTAAGATCATAGGGAAGGACAACCTGGAGGCTCTGCAGAGACCCATGCTTCTT
CATCTGGTCCGGGGGAAGGTCAAGGAGTTCTACTCCTATGAAAACGAGCCAGTGGGCATAGAAAATCTCA
AGAGAGGCTTGGCTAGCTTATTCCAGATGCAGCTAAGCTCTGGAACTACCAACGAGGTAGATATCTCTGG
GGATTGTAAAGTGACCTACCAGGCCCAGCAAGACAAAGTGGTCAAAATTAAGGCTCTGGATACATGCAAA
ATTGAGCGGTCTGGATTTACAACGGCAAACCAGGTGCTGGGTGTCAGTTCAAAAGCCACATCTGTCACTA
CCTACAAGATAGAGGACAGCTTTGTCACCGCTGTGCTTGCAGAAGAGACCAGGGCTTTTGCCTTGAACTT
CCAACAAACCATAGCAGGAAAAATAGTGTCGAAGCAGAAATTGGAGCTGAAGACAACTGAAGCCGGCCCA
AGGATGATCCCCGGGAAGCAAGTGGCAGGTGTAATTAAAGCAGTTGATTCCAAATACAAAGCCATTCCCA
TTGTGGGACAGGTCCTCGAGCGTGTCTGCAAAGGATGCCCTTCTCTGGCGGAGCACTGGAAGTCCATCAG
AAAGAACCTGGAGCCTGAAAACCTGTCCAAGGCCGAGGCCGTCCAGAGCTTCCTGGCCTTCATTCAGCAC
CTCCGGACTTCGAGGAGAGAAGAGATCCTCCAGATTCTGAAGGCAGAGAAGAAAGAAGTGCTCCCTCAGC
TGGTGGATGCCGTCACCTCTGCTCAGACTCCAGACTCGCTAGAAGCCATCCTGGACTTTTTGGATTTCAA
AAGTGACAGCAGTATCATACTCCAGGAAAGGTTCCTCTATGCCTGTGGCTTTGCCACCCACCCTGATGAA
GAACTCCTACGAGCCCTCCTTAGTAAGTTCAAAGGTTCCTTTGCAAGCAACGACATCAGAGAGTCGGTTA
TGATCATCATTGGAGCCCTGGTCAGGAAGCTGTGTCAGAATGAAGGCTGCAAGCTCAAGGCAGTGGTGGA
AGCTAAGAAGCTGATCCTGGGAGGACTTGAAAAACCAGAGAAGAAAGAAGACACCACAATGTACCTGCTG
GCCCTGAAGAATGCCTTGCTTCCCGAAGGCATCCCGCTCCTTCTGAAGTATGCTGAGGCTGGAGAAGGGC
CCGTCAGCCACCTGGCCACCACTGTTCTCCAGAGATACGATGTCTCCTTCATCACAGATGAGGTGAAGAA
GACCTTGAACAGGATATACCACCAGAATCGTAAGGTTCATGAGAAGACGGTGCGCACAACTGCCGCTGCT
GTCATCTTAAAGAACCCATCCTACATGGATGTGAAGAACATCCTGCTGTCCATTGGGGAACTCCCGAAAG
AGATGAACAAATACATGCTCACTGTTGTGCAAGACATCCTGCATTTTGAAATGCCTGCAAGCAAAATGAT
CCGTCGAGTTCTCAAGGAGATGGCTGTTCACAATTATGACCGTTTCTCCAAGAGTGGATCCTCTTCTGCC
TATACTGGCTACGTAGAACGTAGCCCCCGTGCAGCGTCCACATACAGCCTTGACATCCTTTACTCTGGCT
CTGGCATTCTGAGGAGAAGTAACCTGAACATCTTCCAGTACATCGGGAAGGCAGAGCTTCATGGTAGTCA
GGTGGTGATTGAAGCCCAAGGGCTGGAAGGCTTAATTGCAGCCACTCCTGATGAAGGAGAGGAGAACCTT
GACTCTTATGCTGGCATGTCAGCCATCCTGTTTGATGTTCAGCTTAGGCCTGTCACATTTTTTAATGGAT
ACAGTGATTTGATGTCCAAAATGCTGTCGGCATCCGGCGACCCTGTCAGCGTGGTGAAAGGGCTTATTCT
GTTAATAGACCATTCTCAGGATATTCAGCTGCAATCTGGACTAAAGGCCAATATGGAGATCCAGGGTGGT
CTAGCTATTGATATTTCTGGTTCAATGGAATTCAGTCTGTGGTATCGAGAGTCTAAAACCCGAGTGAAAA
ATCGGGTGGCTGTGGTGATAACCAGCGACGTCACAGTGGATGCCTCTTTTGTGAAAGCTGGTGTGGAAAG
CAGAGCGGAGACAGAGGCTGGGCTGGAGTTCATCTCCACAGTGCAGTTCTCACAGTACCCGTTCTTGGTC
TGCATGCAGATGGACAAGGCTGAAGCCCCACTCAGGCAATTCGAGACAAAGTATGAAAGGCTATCTACAG
GCAGGGGATATGTCTCTCGGAGAAGAAAAGAGAGCCTAGTGGCCGGATGTGAACTCCCCCTCCATCAAGA
GAACTCTGAGATGTGCAACGTGGTATTCCCACCTCAGCCAGAAAGCGATAACTCCGGTGGATGGTTTTGA

Translation (909 aa):
MTVVMGKCQVSDGRQLLLFYAVLLLFPTLCAMQNSGHTTGLSLNNERLYKLTYSTEVFLDGGKGKPQDSV
GYKISSDVDVVLLWRNPDGDDDQVIQVTITAVNVENAGQQRGEKSIFQGKSTPKIIGKDNLEALQRPMLL
HLVRGKVKEFYSYENEPVGIENLKRGLASLFQMQLSSGTTNEVDISGDCKVTYQAQQDKVVKIKALDTCK
IERSGFTTANQVLGVSSKATSVTTYKIEDSFVTAVLAEETRAFALNFQQTIAGKIVSKQKLELKTTEAGP
RMIPGKQVAGVIKAVDSKYKAIPIVGQVLERVCKGCPSLAEHWKSIRKNLEPENLSKAEAVQSFLAFIQH
LRTSRREEILQILKAEKKEVLPQLVDAVTSAQTPDSLEAILDFLDFKSDSSIILQERFLYACGFATHPDE
ELLRALLSKFKGSFASNDIRESVMIIIGALVRKLCQNEGCKLKAVVEAKKLILGGLEKPEKKEDTTMYLL
ALKNALLPEGIPLLLKYAEAGEGPVSHLATTVLQRYDVSFITDEVKKTLNRIYHQNRKVHEKTVRTTAAA
VILKNPSYMDVKNILLSIGELPKEMNKYMLTVVQDILHFEMPASKMIRRVLKEMAVHNYDRFSKSGSSSA
YTGYVERSPRAASTYSLDILYSGSGILRRSNLNIFQYIGKAELHGSQVVIEAQGLEGLIAATPDEGEENL
DSYAGMSAILFDVQLRPVTFFNGYSDLMSKMLSASGDPVSVVKGLILLIDHSQDIQLQSGLKANMEIQGG
LAIDISGSMEFSLWYRESKTRVKNRVAVVITSDVTVDASFVKAGVESRAETEAGLEFISTVQFSQYPFLV
CMQMDKAEAPLRQFETKYERLSTGRGYVSRRRKESLVAGCELPLHQENSEMCNVVFPPQPESDNSGGWF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH