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Report for CCDS49730.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49730.1 Public Mus musculus 15 Larp4 23 108 98 CCDS HistoryNCBI Gene:207214Re-query CCDS DB by CCDS ID:49730.1Re-query CCDS DB by GeneID:207214See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49730.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000057632.15 ENSMUSP00000086964.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000057632.15Link to Ensembl Protein Viewer:ENSMUSP00000086964.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000057632Re-query CCDS DB by Protein ID:ENSMUSP00000086964
Original member Current member NCBI NM_001080948.2 NP_001074417.1 Accepted alive Link to Nucleotide Sequence:NM_001080948.2Link to Protein Sequence:NP_001074417.1Re-query CCDS DB by Nucleotide ID:NM_001080948Re-query CCDS DB by Protein ID:NP_001074417Link to BLAST:NP_001074417.1

Chromosomal Locations for CCDS 49730.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 99970267 99970278 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 99984917 99985055 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 99986038 99986193 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 99987403 99987478 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 99990293 99990429 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 99991725 99991828 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 99993323 99993433 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 99994664 99994717 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 99996467 99996676 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 99997373 99997476 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 100000836 100001048 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 100001802 100001850 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 100005241 100005402 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 100007607 100007728 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 100010292 100010460 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 100011836 100012174 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2157 nt):
ATGGCTTTGGAGCAGGTGACATCTAAAGGCACTGGTTTAAATCCTAATGCCAAAGTATGGCAAGAAATTC
CTTCTGGAAATCCGGATGGCACTCCTGTAACTGAACCCTCTTGGCATGAAACTGCAGCCACATCTGGATC
TCACCCTGAGGGCCATACAGAACTTTCAGAAGATATGTGTAAGGAATATGAAGTAATGTATTCTCCATCT
TGTGAAACCACAAGGAATACTGCAGATGTTGAAGAGTCAGCTGATGGAATGATCTTAGGACCGGAAGACC
TGAGTTACCAACTCTATGATGTTTCTGGAGAAAGCAGTTCAGCAATTTCTACAGAAGATTTAAAAGAATG
TCTGAAAAAACAATTGGAATTCTGTTTCTCACGAGAAAATTTATCAAAGGACCTTTACTTGATATCTCAA
ATGGATAGTGATCAGTTCGTCCCAATATGGACGGTTGCCAACATGGAAGAAATTAAAAAATTGACTACAA
ATACAGATTTAATTCTTGAAGTATTGAGATCTTCCCCTATGGTACAAGTTGATGAGAAGGGAGAAAAGGT
GAGACCAAGTCATAAGCGATGTATTGTGATTCTCAGAGAGATTCCTGAGACAACGCCTGTAGAGGAAGTG
AAAGCTTTGTTTAAAAATGAAAACTGCCCCAAAGTGATAAGCTGTGAGTTTGCGCACAACAGCAACTGGT
ACATCACTTTCCAGTCAGACACAGATGCACAGCAGGCTTTTAAATACTTAAGAGAAGAAGTTAAAACATT
TCAGGGCAAGCCAATCATGGCAAGGATAAAAGCCATCAATACATTTTTTGCTAAGAATGGTTATCGATTA
ATGGATTCTAGTATGTATACTCAACCTATTCAGACTCCTACCCAATATCCCTCACCAGTCTTCATGCAAC
CAGTGTATAATCCTCAGCAGTACTCAGTGTATAGTCTTGTGCCTCAGTCTTGGTCTCCAAGTCCTGCACC
TTACTTTGAAACACCACTGGCTCCCTTTCCCAATGGTAGTTTTGTGAATGGCTTTAGTTCACCAGGATCT
TACAAAACAAATGCTGCTGCTATGAATATGGGCCGACCATTCCCAAAAAATCGTGTGAAGCCTCATTTTA
GGTCATCCAGTGGTTCAGAACACTCAACAGAGGGCTCCGTGTCATTGGGGGATGGACCACTGAGCAGATC
TAGTTCAAGGATCTTTCTTTCTGAACGGCATAACCCAACAGTAACAGGGCAGCAGGAACAAACTTATCTT
CCAAAGGAGGCTCCCATTTTACAGATGGAACAGAATGGGGACTTTGGAAGAGGCAGGCGAACTCTCTTCA
GAGGCCGAAGGCGAAGGGATGATGACAGGATCCCAAGACCCCAACCTGCAGCAACTGAAGCCAAGGCTCC
AACTCCGAAGTTTGATTTGCTTGCTACAAATTTCCCTCCTTTACCTGGAAGCTCATCGAGAGTGCCAGAT
GAACTTGGTTTGGAGAACAGAATGTCTGATGTCGTTAAAGGTGTCTGCAGAGAAAAGGACAGCGAGGACG
TGCGAGTTAGTTGCCCAGTGCCTGCAGAGGACGGACAGACAGACTGCACTTCTGCGCCGCTCAGCATAAG
TCCTAGTCCTCCGTGTACAGCTGAGCCTCCTGTGTTAAGCACGACTCAGCAAGAGCAGGATCAGATGGAG
GACTCTGCTGTTCCAAAGGACACTCTCAACCCAGTAGCTGTGCCAGTGTCTTCTCCAACTGCCACAAAGC
CATCCCCGGCAAACACGGCTTCACCTTGCACTAGTAACATAAACCCACCGAGAGCTGTGGCCCTGCAGGA
ACCTCGAAAGTTAAGCTATGCTGAAGTGTGCCAGAAGCCTCCTAAAGAGCCATCTCCAGTTCTCGTACAG
CCGCTGCGGGAACTCCGGTCTAATGCAGTATCCCCCACCAGAAATGAAGAGAACGGAGCTCCCGAGAAGC
CTGTTGAGAAGCCGCATGAGAAACCAGAAACAAGGGCTAGTAAGGATCATTCTGGCTTCCGAGGCAACAC
TATTCCCAGGGGAGCGGCTGGAAAAATCAGGGAACAGAGACGCCAGTTCAGCCATAGGGCTACACCTCAG
GGAGTGACTCGACGTAATGGGAAAGAGCAATACGTGCCACCCAGATCACCAAAGTAA

Translation (718 aa):
MALEQVTSKGTGLNPNAKVWQEIPSGNPDGTPVTEPSWHETAATSGSHPEGHTELSEDMCKEYEVMYSPS
CETTRNTADVEESADGMILGPEDLSYQLYDVSGESSSAISTEDLKECLKKQLEFCFSRENLSKDLYLISQ
MDSDQFVPIWTVANMEEIKKLTTNTDLILEVLRSSPMVQVDEKGEKVRPSHKRCIVILREIPETTPVEEV
KALFKNENCPKVISCEFAHNSNWYITFQSDTDAQQAFKYLREEVKTFQGKPIMARIKAINTFFAKNGYRL
MDSSMYTQPIQTPTQYPSPVFMQPVYNPQQYSVYSLVPQSWSPSPAPYFETPLAPFPNGSFVNGFSSPGS
YKTNAAAMNMGRPFPKNRVKPHFRSSSGSEHSTEGSVSLGDGPLSRSSSRIFLSERHNPTVTGQQEQTYL
PKEAPILQMEQNGDFGRGRRTLFRGRRRRDDDRIPRPQPAATEAKAPTPKFDLLATNFPPLPGSSSRVPD
ELGLENRMSDVVKGVCREKDSEDVRVSCPVPAEDGQTDCTSAPLSISPSPPCTAEPPVLSTTQQEQDQME
DSAVPKDTLNPVAVPVSSPTATKPSPANTASPCTSNINPPRAVALQEPRKLSYAEVCQKPPKEPSPVLVQ
PLRELRSNAVSPTRNEENGAPEKPVEKPHEKPETRASKDHSGFRGNTIPRGAAGKIREQRRQFSHRATPQ
GVTRRNGKEQYVPPRSPK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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