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Report for CCDS15285.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15285.1 Public Mus musculus 1 Dstyk 23 108 98 CCDS HistoryNCBI Gene:213452Re-query CCDS DB by CCDS ID:15285.1Re-query CCDS DB by GeneID:213452See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15285.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000045110.13 ENSMUSP00000035358.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000045110.13Link to Ensembl Protein Viewer:ENSMUSP00000035358.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000045110Re-query CCDS DB by Protein ID:ENSMUSP00000035358
Original member Current member NCBI NM_172516.4 NP_766104.2 Accepted alive Link to Nucleotide Sequence:NM_172516.4Link to Protein Sequence:NP_766104.2Re-query CCDS DB by Nucleotide ID:NM_172516Re-query CCDS DB by Protein ID:NP_766104Link to BLAST:NP_766104.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766104.2 927 Q6XUX1-1 927 100% 0 0

Chromosomal Locations for CCDS 15285.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 132417606 132417870 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 132434099 132434487 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 132449312 132449975 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 132453087 132453319 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 132454061 132454144 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 132455232 132455408 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 132455860 132455989 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 132456325 132456481 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 132456869 132457001 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 132458317 132458430 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 132459876 132459990 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 132462913 132463047 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 132463324 132463511 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2784 nt):
ATGGAGGCCGACGGGCAGTCATGGGCCGGCGAGTCCGTGTCGGGCCCGGGTCCCGGAGGCGGCGGAATGA
TCCGCGAGCTGTGCCGGGGCTTCAGCCGCTACCGCCGCTACCTGGGACGGCTGCGGCAGAACCTGCGAGA
GACCCAGAAGTTCTTCCGCGACATCAAGTGCTCCCACAGCCACAGTTGTCCCTCCTCCCCCGCGGGCGGC
GGAGCGGCCGAGCTTGGCCCTGCCGGCGACGTCGCCGAAGCCCCGCTGCCGGCGGGCCAGCTGAGCTGCA
TTTCCTTCCCACCCATGGAAGAGACGTATCTGCAGCAGCTTGTGGACCGCCTTCCCTGTATACTGATCCT
CGGCCAGGACTGCAACGCCAAGTGCCAGCTGCTGAACCTGCTGTTGGGGGTGCAGGTGCTTCCCACCCTC
AAGCTGGACAGTGATGAGAGCTGTAAGCTTCGTCGCCTCCGCTTCACCTATGGGACTCGGACTCGGGTCA
GCTTGGCGCTCCCCGGTCAGTATGAACTAGTGCACACGCTAGCTTCACATCAGGACAACTGGGAGACTAT
CCCTGAGGAGGACCTGGAGGTTCAAGAAGACAGTGAGGACGCTGCTCATGTGCTAGCTGACCTCGAGGTG
ACAATGCATCATGCTCTCCTGCAGGAAGTGGACATTGTGGTGGCACCGTGCCCGAGCCACCGGCCCTCAG
TAGATGTTCTGAGTGACTTGGCAAATGACTTCTTGCCTGTGATAACCTATGCACTTCACAAGGATGAACT
CTCTGAGCGGGGTGAGCAAGAGCTTCGGGAAGTTAGACAGTATTTCTCCTTCCCCATGTTCTTTTTCAAA
GTACCCAAGCTGGAGATAATCAGCTCTTCCAGTGGGAGAGCAGAGAGTGAAAGGTCACCACTGTATGGAC
AGCTGGTGGACCTGGGCTACCTGAGCAGCAGTCACAGGAACTGTGTGCCCTCTGACCAGGACTGTAAAGC
TCAGAGCATGTTGGTGGAGCAAAGTGAGAAGCTGAAACAACTGAGTACATTTTCTCACCAGCTGCTACAG
AACCGCCTAGTGGATGCAGCCAAGGCCCTGAATGTGGTGCACAGCCACTGCCTTGACATCTTTATTAACC
AGGCTTTTGACATGCAGCGGGACCTGCAGATTACTCCCAAACGCCTAGAATATACTAGAAAAAAGGAGAA
TGAATTGTATGAATCGTTGATGAATATTGCCAACCGAAAGCAAGAGGAAATGAAGGATATGATTGTTGAG
ACACTTAACACCATGAAAGAGGAACTTCTGGATGATGCTGCCAACATGGAGTTTAAAGATGTCATTGTCC
CTGAGAATGGAGAAACAATCGGGACCAGGGAGATCAAATCCTGCATCCGCCAGATCCAGGAGCTCATCAT
CTCCAGGCTCAATCAGGCCGTGGCCAACAAGCTGATCAGCTCAGTGGACTACCTGCGGGAAAGCTTTGTT
GGGACCCTGGAGCGGTGTCTGCAGAGCCTTGAAAAATCACAGGATGTCTCAGTTCATATTACCAGCAACT
ATCTCAAACAGATCTTAAATGCCGCTTACCATGTTGAGGTCACTTTTCACTCGGGATCCTCAGTTACTCG
GATGCTTTGGGAACAAATCAAGCAGATCATCCAGCGTATCACATGGGTGAACCCACCCACCATCACTCTA
GAGTGGAAGAGGAAGGTGGCCCAGGAAGCCATCGACAGCCTCAGCGCCTCCAAGTTGGCCAAGAGCATTT
GCAGCCAGTTCCGCACGCGGCTCAATAGTTCTCATGAGGCGTTTGCAGCCTCCTTGAGGCAGCTGGAAGC
TGGCCATTCTGGCCGTCTGGAGAAAACTGAAGATCTGTGGCTAAAGGTTCGAAAAGATCACGCCCCTCGT
CTGGCCCGCCTTTCGCTAGAGAGCCGGTCTTTACAGGATGTCTTGCTTCACCGTAAACCTAAATTAGGAC
AGGAACTAGGCCGGGGCCAATATGGTGTGGTATACCTGTGTGACAACTGGGGGGGACACTTCCCTTGTGC
CCTCAAATCAGTTGTTCCTCCAGATGAGAAGCACTGGAACGATCTGGCATTGGAGTTTCATTACATGAGG
TCTCTGCCAAAGCATGAGCGGCTGGTCGATCTTCATGGCTCAGTCATTGACTACAACTATGGTGGCGGCT
CCAGCGTTGCTGTACTGCTTATCATGGAGCGGCTACACCGGGACCTCTACACAGGGCTGAAGGCTGGGCT
GACCCTGGAGACACGTTTGCAAATAGCTCTGGATGTGGTGGAGGGAATCCGCTTTCTGCACAGCCAGGGG
CTTGTTCATCGGGATATCAAACTGAAAAATGTGCTGCTGGACAAACAAAACCGTGCCAAGATCACCGACT
TAGGATTCTGTAAACCAGAAGCTATGATGTCAGGCAGCATTGTGGGGACACCAATCCATATGGCCCCTGA
ACTTTTCACAGGAAAGTATGATAACTCTGTGGACGTCTATGCTTTTGGGATCCTTTTTTGGTATATCTGC
TCCGGCTCTATCAAGCTCCCTGAGGCATTTGAGAGGTGTGCTAGCAAAGACCATCTCTGGAATAATGTGC
GCAGAGGGACCCGTCCAGAGCGTCTTCCTGTGTTTGATGAGGAGTGCTGGCAGTTGATGGAGGCGTGTTG
GGATGGTGACCCCTTGAAGAGGCCCCTCTTGGGCATCGTGCAGCCTATGCTCCGAAGCATTATGGACCGG
CTCTGCAAGTGCAGCTCTGAACAACCAAACAGAGGACTAGACGATTCTACTTGA

Translation (927 aa):
MEADGQSWAGESVSGPGPGGGGMIRELCRGFSRYRRYLGRLRQNLRETQKFFRDIKCSHSHSCPSSPAGG
GAAELGPAGDVAEAPLPAGQLSCISFPPMEETYLQQLVDRLPCILILGQDCNAKCQLLNLLLGVQVLPTL
KLDSDESCKLRRLRFTYGTRTRVSLALPGQYELVHTLASHQDNWETIPEEDLEVQEDSEDAAHVLADLEV
TMHHALLQEVDIVVAPCPSHRPSVDVLSDLANDFLPVITYALHKDELSERGEQELREVRQYFSFPMFFFK
VPKLEIISSSSGRAESERSPLYGQLVDLGYLSSSHRNCVPSDQDCKAQSMLVEQSEKLKQLSTFSHQLLQ
NRLVDAAKALNVVHSHCLDIFINQAFDMQRDLQITPKRLEYTRKKENELYESLMNIANRKQEEMKDMIVE
TLNTMKEELLDDAANMEFKDVIVPENGETIGTREIKSCIRQIQELIISRLNQAVANKLISSVDYLRESFV
GTLERCLQSLEKSQDVSVHITSNYLKQILNAAYHVEVTFHSGSSVTRMLWEQIKQIIQRITWVNPPTITL
EWKRKVAQEAIDSLSASKLAKSICSQFRTRLNSSHEAFAASLRQLEAGHSGRLEKTEDLWLKVRKDHAPR
LARLSLESRSLQDVLLHRKPKLGQELGRGQYGVVYLCDNWGGHFPCALKSVVPPDEKHWNDLALEFHYMR
SLPKHERLVDLHGSVIDYNYGGGSSVAVLLIMERLHRDLYTGLKAGLTLETRLQIALDVVEGIRFLHSQG
LVHRDIKLKNVLLDKQNRAKITDLGFCKPEAMMSGSIVGTPIHMAPELFTGKYDNSVDVYAFGILFWYIC
SGSIKLPEAFERCASKDHLWNNVRRGTRPERLPVFDEECWQLMEACWDGDPLKRPLLGIVQPMLRSIMDR
LCKCSSEQPNRGLDDST


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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