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Report for CCDS40556.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40556.1 Public Mus musculus 9 Angptl8 23 108 98 CCDS HistoryNCBI Gene:624219Re-query CCDS DB by CCDS ID:40556.1Re-query CCDS DB by GeneID:624219See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40556.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000058777.7 ENSMUSP00000058951.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000058777.7Link to Ensembl Protein Viewer:ENSMUSP00000058951.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000058777Re-query CCDS DB by Protein ID:ENSMUSP00000058951
Original member Current member NCBI NM_001080940.1 NP_001074409.1 Accepted alive Link to Nucleotide Sequence:NM_001080940.1Link to Protein Sequence:NP_001074409.1Re-query CCDS DB by Nucleotide ID:NM_001080940Re-query CCDS DB by Protein ID:NP_001074409Link to BLAST:NP_001074409.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001074409.1 198 Q8R1L8 198 100% 0 0

Chromosomal Locations for CCDS 40556.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 21835518 21835814 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21835916 21836077 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21836843 21836952 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21837060 21837087 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (597 nt):
ATGGCTGTGCTTGCTCTCTGCCTCCTGTGGACCTTAGCATCAGCAGTGCGACCCGCTCCAGTGGCCCCTC
TGGGTGGTCCAGAGCCAGCTCAATATGAAGAGCTGACCCTGCTCTTTCACGGGGCCCTGCAGCTAGGCCA
GGCCCTCAATGGCGTGTACAGAGCCACAGAGGCTCGCCTGACAGAAGCTGGGCACAGCCTGGGCCTCTAT
GACAGAGCACTGGAATTCCTGGGGACAGAAGTCAGGCAGGGCCAGGATGCCACACAGGAGCTTCGCACCA
GCCTGTCGGAGATTCAGGTGGAAGAGGACGCTTTACACCTTCGAGCTGAAGCCACAGCCCGATCACTGGG
GGAAGTGGCCCGGGCCCAGCAGGCTCTGCGGGACACTGTACGGAGACTACAAGTGCAGCTGAGAGGCGCC
TGGCTCGGTCAAGCCCACCAAGAATTTGAGACCTTAAAGGCTCGAGCTGATAAGCAGAGCCACCTCTTAT
GGGCTCTCACTGGCCACGTGCAGCGACAGCAGCGGGAGATGGCAGAGCAGCAACAGTGGCTGCGACAGAT
CCAGCAGAGACTCCACACAGCAGCCCTCCCAGCCTGA

Translation (198 aa):
MAVLALCLLWTLASAVRPAPVAPLGGPEPAQYEELTLLFHGALQLGQALNGVYRATEARLTEAGHSLGLY
DRALEFLGTEVRQGQDATQELRTSLSEIQVEEDALHLRAEATARSLGEVARAQQALRDTVRRLQVQLRGA
WLGQAHQEFETLKARADKQSHLLWALTGHVQRQQREMAEQQQWLRQIQQRLHTAALPA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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