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Report for CCDS39683.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39683.1 Public Mus musculus 6 Gsg1 23 108 98 CCDS HistoryNCBI Gene:14840Re-query CCDS DB by CCDS ID:39683.1Re-query CCDS DB by GeneID:14840See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39683.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000111910.3 ENSMUSP00000107541.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000111910.3Link to Ensembl Protein Viewer:ENSMUSP00000107541.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000111910Re-query CCDS DB by Protein ID:ENSMUSP00000107541
Original member Current member EBI ENSMUST00000111911.8 ENSMUSP00000107542.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000111911.8Link to Ensembl Protein Viewer:ENSMUSP00000107542.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000111911Re-query CCDS DB by Protein ID:ENSMUSP00000107542
Original member Current member NCBI NM_001080553.1 NP_001074022.1 Accepted alive Link to Nucleotide Sequence:NM_001080553.1Link to Protein Sequence:NP_001074022.1Re-query CCDS DB by Nucleotide ID:NM_001080553Re-query CCDS DB by Protein ID:NP_001074022Link to BLAST:NP_001074022.1
Original member Current member NCBI NM_010352.2 NP_034482.2 Accepted alive Link to Nucleotide Sequence:NM_010352.2Link to Protein Sequence:NP_034482.2Re-query CCDS DB by Nucleotide ID:NM_010352Re-query CCDS DB by Protein ID:NP_034482Link to BLAST:NP_034482.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001074022.1 365 Q8R1W2-4 365 100% 0 0
NP_034482.2 365 Q8R1W2-4 365 100% 0 0

Chromosomal Locations for CCDS 39683.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 135237403 135237745 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 135240073 135240184 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 135241245 135241397 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 135242051 135242221 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 135244081 135244399 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1098 nt):
ATGGAGTTCCAGAAGGGTTCCTCTGACCAGCGGACCTTCATTTCTGCCATCCTCAACATGTTATCACTCG
GCCTCTCCACAGCATCCTTGCTCAGCAGCGAGTGGTTTGTGGGCACACAGAAGGTGCCCAAGCCCCTGTG
CGGGCAAAGTCTGGCAGCCAAGTGCTTTGACATGCCGATGTCCTTGGATGGGGGCATCGCCAACACATCA
GCCCAGGAGGTGGTACAATACACCTGGGAGACTGGGGATGACCGGTTCTCCTTCCTTGCCTTCCGCAGTG
GCATGTGGCTATCCTGTGAGGAAACCATGGAAGAGCCAGGGGAGAAGTGCAGACGTTTCATTGAACTCAC
ACCACCAGCCCAGAGAGGTGAGAAAGGACTACTGGAATTTGCCACGTTGCAAGGCTCATGTCACCCCACT
CTCCGATTTGGAGGGGAGTGGTTAATGGAGAAGGCTTCTCTCCTCCACCTCCCTTGGGGGCCCGTGGCAA
AGGTCTTTTGGCTGTCACTGGGAGCCCAGACTGCCTATATCGGACTTCAACTCATCAGCTTCCTCCTGCT
ACTGACGGATCTGTTGCTCACCACGAACCCTGGCTGTGGGCTCAAGCTAAGCGCGTTTGCAGCCGTCTCC
TTGGTCCTGTCAGGACTTCTGGGGATGGTGGCTCATATGCTATATTCACAAGTCTTCCAGGCAACTGCCA
ACTTAGGTCCGGAGGACTGGAGACCACACTCTTGGAATTACGGCTGGGCCTTCTACACAGCGTGGGTTTC
CTTCACCTGCTGCATGGCGTCAGCGGTCACCACCTTCAACATGTACACGAGGATGGTGCTGGAGTTCAAG
TGCAGGCACAGCAAGAGCTTTAACACCAACCCCAGCTGCCTGGCGCAGCACCACCGCTGTTTCCTTCCTC
CTCCGCTGACGTGCACAACCCACGCAGGGGAACCTTTGTCCAGCTGCCATCAGTACCCCAGCCATCCCAT
CCGCTCTGTCTCTGAAGCTATTGACCTCTACTCGGCGCTACAGGACAAAGAATTTCAACAAGGGATCAGC
CAGGAGCTAAAGGAAGTGGTCGAGCCATCTGTAGAAGAGCAGCGTTAG

Translation (365 aa):
MEFQKGSSDQRTFISAILNMLSLGLSTASLLSSEWFVGTQKVPKPLCGQSLAAKCFDMPMSLDGGIANTS
AQEVVQYTWETGDDRFSFLAFRSGMWLSCEETMEEPGEKCRRFIELTPPAQRGEKGLLEFATLQGSCHPT
LRFGGEWLMEKASLLHLPWGPVAKVFWLSLGAQTAYIGLQLISFLLLLTDLLLTTNPGCGLKLSAFAAVS
LVLSGLLGMVAHMLYSQVFQATANLGPEDWRPHSWNYGWAFYTAWVSFTCCMASAVTTFNMYTRMVLEFK
CRHSKSFNTNPSCLAQHHRCFLPPPLTCTTHAGEPLSSCHQYPSHPIRSVSEAIDLYSALQDKEFQQGIS
QELKEVVEPSVEEQR


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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