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Report for CCDS11815.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11815.2 Public Homo sapiens 17 WDR45B 24 110 108 CCDS HistoryNCBI Gene:56270Re-query CCDS DB by CCDS ID:11815.2Re-query CCDS DB by GeneID:56270See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 11815.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000392325.9 ENSP00000376139.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000392325.9Link to Ensembl Protein Viewer:ENSP00000376139.4Re-query CCDS DB by Nucleotide ID:ENST00000392325Re-query CCDS DB by Protein ID:ENSP00000376139
Original member Current member NCBI NM_019613.4 NP_062559.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_019613.4Link to Protein Sequence:NP_062559.2Re-query CCDS DB by Nucleotide ID:NM_019613Re-query CCDS DB by Protein ID:NP_062559Link to BLAST:NP_062559.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_062559.2 344 Q5MNZ6 344 100% 0 0

Chromosomal Locations for CCDS 11815.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 82615919 82616025 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 82616524 82616645 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 82617296 82617397 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 82619043 82619128 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 82621609 82621799 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 82625389 82625483 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 82627204 82627291 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 82630921 82631022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 82643949 82644023 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 82648274 82648340 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1035 nt):
ATGAACCTCCTGCCGTGTAACCCTCACGGCAACGGGCTGCTCTACGCCGGCTTCAACCAGGACCACGGAT
GCTTTGCGTGTGGGATGGAAAATGGATTCCGAGTCTATAACACTGATCCACTAAAAGAAAAAGAGAAACA
AGAATTTCTAGAAGGAGGAGTTGGCCATGTTGAAATGTTATTTCGCTGCAACTATTTAGCTTTAGTTGGT
GGTGGAAAAAAGCCGAAATACCCTCCCAACAAAGTAATGATCTGGGATGACCTGAAGAAGAAGACTGTTA
TTGAAATAGAATTTTCTACAGAAGTCAAGGCAGTCAAGCTGCGGCGAGATAGAATTGTGGTGGTTTTGGA
CTCCATGATTAAGGTGTTCACATTCACACACAATCCCCATCAGTTGCACGTCTTCGAAACCTGCTATAAC
CCCAAAGGCCTCTGTGTCCTTTGTCCCAATAGTAACAACTCCCTCCTGGCCTTTCCGGGCACGCACACGG
GCCATGTGCAGCTTGTGGACCTGGCCAGCACGGAGAAGCCACCCGTGGACATTCCTGCACACGAGGGTGT
CCTGAGCTGCATTGCACTCAACCTGCAGGGAACAAGAATTGCAACTGCATCCGAGAAAGGGACGCTTATA
AGAATATTTGATACTTCATCAGGGCATTTAATCCAGGAACTGCGAAGAGGATCTCAAGCAGCCAATATTT
ACTGCATCAACTTCAATCAGGATGCGTCCCTCATCTGCGTATCCAGCGACCACGGCACAGTGCATATTTT
TGCAGCTGAAGATCCAAAAAGGAATAAACAGTCCAGTTTGGCCTCAGCCAGTTTCCTTCCAAAATACTTC
AGTTCCAAGTGGAGTTTCTCCAAGTTTCAGGTTCCCTCAGGCTCTCCGTGCATTTGTGCCTTTGGAACAG
AGCCAAACGCCGTCATTGCAATTTGTGCAGACGGCAGCTACTACAAATTCCTGTTCAACCCCAAGGGGGA
GTGCATCCGAGATGTCTACGCGCAGTTTCTAGAGATGACCGATGACAAGCTGTGA

Translation (344 aa):
MNLLPCNPHGNGLLYAGFNQDHGCFACGMENGFRVYNTDPLKEKEKQEFLEGGVGHVEMLFRCNYLALVG
GGKKPKYPPNKVMIWDDLKKKTVIEIEFSTEVKAVKLRRDRIVVVLDSMIKVFTFTHNPHQLHVFETCYN
PKGLCVLCPNSNNSLLAFPGTHTGHVQLVDLASTEKPPVDIPAHEGVLSCIALNLQGTRIATASEKGTLI
RIFDTSSGHLIQELRRGSQAANIYCINFNQDASLICVSSDHGTVHIFAAEDPKRNKQSSLASASFLPKYF
SSKWSFSKFQVPSGSPCICAFGTEPNAVIAICADGSYYKFLFNPKGECIRDVYAQFLEMTDDKL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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