NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS20504.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20504.1 Public Mus musculus 6 C3ar1 23 108 98 CCDS HistoryNCBI Gene:12267Re-query CCDS DB by CCDS ID:20504.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20504.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000042081.8 ENSMUSP00000048092.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000042081.8Link to Ensembl Protein Viewer:ENSMUSP00000048092.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000042081Re-query CCDS DB by Protein ID:ENSMUSP00000048092
Original member Current member NCBI NM_009779.2 NP_033909.1 Accepted alive Link to Nucleotide Sequence:NM_009779.2Link to Protein Sequence:NP_033909.1Re-query CCDS DB by Nucleotide ID:NM_009779Re-query CCDS DB by Protein ID:NP_033909Link to BLAST:NP_033909.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033909.1 477 O09047 477 100% 0 0

Chromosomal Locations for CCDS 20504.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 122849823 122851256 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1434 nt):
ATGGAGTCTTTCGATGCTGACACCAATTCAACTGACCTACACTCACGGCCTCTGTTTCAACCCCAAGACA
TTGCCTCCATGGTCATTCTTGGTCTCACTTGTCTATTGGGACTGCTAGGCAATGGGCTGGTGCTGTGGGT
AGCTGGCGTAAAGATGAAGACGACCGTGAACACAGTCTGGTTCCTCCATCTCACCCTGGCCGATTTCCTC
TGCTGCCTCTCCTTGCCCTTCTCCTTGGCTCACCTGATTCTCCAAGGACACTGGCCCTATGGCTTGTTCC
TGTGCAAACTTATCCCATCCATCATTATTCTCAACATGTTTGCCAGTGTCTTCCTGCTTACTGCCATTAG
CCTGGACCGATGTCTGATAGTACATAAGCCAATCTGGTGCCAGAATCATCGAAACGTGAGAACCGCCTTC
GCCATCTGTGGATGTGTCTGGGTGGTAGCCTTTGTGATGTGTGTGCCCGTATTTGTATACCGTGATCTGT
TCATTATGGACAATCGCAGTATATGTAGATATAATTTTGATTCCTCCAGGTCATATGATTATTGGGACTA
CGTGTACAAACTAAGTCTACCAGAAAGCAATTCTACTGATAACTCCACTGCTCAGCTAACTGGACATATG
AATGACAGGTCAGCTCCTTCCTCTGTACAGGCAAGGGATTACTTTTGGACAGTTACCACTGCCCTCCAGT
CACAGCCATTCCTAACATCTCCTGAAGACTCATTCTCTCTAGATTCAGCAAACCAACAACCCCATTATGG
TGGAAAGCCTCCTAATGTCCTCACAGCCGCCGTACCCAGCGGGTTTCCTGTTGAAGATCGTAAATCCAAT
ACACTGAACGCTGACGCTTTTCTCTCTGCTCACACAGAACTTTTCCCTACTGCTTCTAGTGGTCATTTAT
ACCCCTATGATTTCCAGGGGGATTATGTTGACCAATTCACGTATGACAATCATGTGCCGACACCGCTGAT
GGCAATAACCATCACAAGGCTGGTGGTGGGCTTCCTGGTGCCGTTTTTCATCATGGTAATTTGTTACAGC
CTCATCGTCTTCAGAATGCGAAAAACCAACTTCACCAAGTCTCGGAACAAAACCTTTCGGGTGGCTGTGG
CTGTGGTCACTGTCTTTTTTATCTGCTGGACTCCATACCATCTTGTCGGAGTCCTGCTATTGATTACTGA
TCCAGAAAGTTCCTTGGGGGAAGCTGTGATGTCCTGGGACCACATGTCCATTGCTTTAGCATCTGCCAAT
AGTTGCTTCAACCCTTTCCTGTATGCCCTCTTGGGGAAAGACTTTAGGAAGAAAGCAAGACAGTCTATAA
AGGGCATTCTGGAAGCAGCCTTCAGCGAAGAGCTCACGCACTCTACCAACTGTACCCAAGACAAAGCCTC
TTCAAAAAGAAACAATATGAGTACAGATGTGTGA

Translation (477 aa):
MESFDADTNSTDLHSRPLFQPQDIASMVILGLTCLLGLLGNGLVLWVAGVKMKTTVNTVWFLHLTLADFL
CCLSLPFSLAHLILQGHWPYGLFLCKLIPSIIILNMFASVFLLTAISLDRCLIVHKPIWCQNHRNVRTAF
AICGCVWVVAFVMCVPVFVYRDLFIMDNRSICRYNFDSSRSYDYWDYVYKLSLPESNSTDNSTAQLTGHM
NDRSAPSSVQARDYFWTVTTALQSQPFLTSPEDSFSLDSANQQPHYGGKPPNVLTAAVPSGFPVEDRKSN
TLNADAFLSAHTELFPTASSGHLYPYDFQGDYVDQFTYDNHVPTPLMAITITRLVVGFLVPFFIMVICYS
LIVFRMRKTNFTKSRNKTFRVAVAVVTVFFICWTPYHLVGVLLLITDPESSLGEAVMSWDHMSIALASAN
SCFNPFLYALLGKDFRKKARQSIKGILEAAFSEELTHSTNCTQDKASSKRNNMSTDV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH