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Report for CCDS39549.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39549.1 Public Mus musculus 6 Copg1 23 108 98 CCDS HistoryNCBI Gene:54161Re-query CCDS DB by CCDS ID:39549.1Re-query CCDS DB by GeneID:54161See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 39549.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000113607.9 ENSMUSP00000109237.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000113607.9Link to Ensembl Protein Viewer:ENSMUSP00000109237.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000113607Re-query CCDS DB by Protein ID:ENSMUSP00000109237
Original member Current member NCBI NM_017477.2 NP_059505.1 Accepted alive Link to Nucleotide Sequence:NM_017477.2Link to Protein Sequence:NP_059505.1Re-query CCDS DB by Nucleotide ID:NM_017477Re-query CCDS DB by Protein ID:NP_059505Link to BLAST:NP_059505.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_059505.1 874 Q9QZE5 874 100% 0 0

Chromosomal Locations for CCDS 39549.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 87888036 87888072 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 87889071 87889123 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 87889657 87889737 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 87889956 87890027 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 87890190 87890269 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 87891949 87892024 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 87892206 87892298 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 87892633 87892719 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 87893796 87893953 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 87894041 87894174 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 87895694 87895761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 87895927 87896115 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 87897953 87898048 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 87902198 87902441 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 87903485 87903560 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 87904088 87904191 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 87904816 87904941 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 87905199 87905267 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 87907373 87907515 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 87907810 87907981 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 87908536 87908633 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 87909664 87909802 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 87910040 87910138 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 87912172 87912302 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2625 nt):
ATGTTGAAGAAATTCGACAAGAAGGACGAGGAGTCTGGTGGAGGCTCCAACCCCCTCCAGCACCTGGAGA
AGAGTGCCGTACTCCAAGAGGCTCGGGTCTTTAACGAAACTCCCATCAATCCCCGGAAATGTGCTCACAT
CCTCACCAAGATCCTTTATCTCATAAACCAGGGGGAGCACCTGGGGACCACGGAAGCAACTGAGGCTTTC
TTTGCCATGACCAAGCTCTTCCAGTCCAATGATCCCACACTCCGCCGCATGTGCTATTTGACCATCAAGG
AGATGTCCTGCATCGCTGAGGATGTCATCATTGTGACAAGCAGCCTGACAAAAGACATGACTGGGAAAGA
GGATAATTACCGCGGTCCTGCTGTCCGTGCCCTCTGCCAGATCACTGACAGCACCATGCTGCAGGCTGTT
GAACGCTACATGAAACAAGCAATTGTGGACAAGGTTCCCAGTGTCTCCAGCTCCGCCCTCGTGTCTTCCC
TGCACCTGCTGAAATGCAGCTTCGATGTGGTCAAGCGCTGGGTGAACGAGGCCCAGGAGGCGGCGTCCAG
TGACAACATCATGGTCCAGTACCATGCCCTAGGACTTCTGTACCATGTGCGGAAGAATGACCGACTGGCC
GTGAGTAAGATGATCAGTAAGTTCACCCGGCACGGCCTCAAGTCCCCCTTTGCCTACTGCATGATGATCC
GAGTGGCCAGCAAGCAACTAGAGGAAGAAGACGGCAGCCGTGACAGCCCGCTGTTTGACTTCATCGAGAG
CTGCCTGCGTAACAAGCATGAGATGGTGGTGTATGAAGCTGCCTCAGCCATTGTCAACCTGCCAGGCTGC
AGTGCCAAAGAGCTGGCCCCTGCTGTGTCAGTGCTCCAGCTTTTCTGTAGCTCACCCAAGGCTGCACTTC
GCTATGCTGCTGTGCGCACCCTCAATAAGGTGGCTATGAAGCACCCTTCAGCGGTGACTGCCTGCAATCT
AGATCTGGAAAACCTGGTTACAGACTCAAACAGGAGCATCGCCACATTGGCCATCACCACCCTGCTCAAG
ACAGGGAGCGAGAGCAGCATTGACCGCCTTATGAAGCAGATTTCCTCCTTCATGTCGGAGATCTCAGATG
AGTTCAAGGTGGTGGTTGTCCAGGCCATCAGTGCCCTGTGCCAGAAGTATCCTCGAAAGCATGCTGTGCT
CATGAACTTCCTGTTCACCATGCTAAGGGAAGAGGGTGGCTTTGAGTACAAGCGTGCCATTGTGGACTGC
ATCATCAGCATCATCGAGGAGAACTCAGAGAGCAAGGAGACAGGATTGTCACACCTGTGCGAGTTCATTG
AGGACTGCGAGTTCACTGTGCTGGCCACCCGCATCCTGCACCTGTTGGGCCAGGAGGGGCCCAAGACCAA
CAACCCTTCCAAGTACATTCGCTTTATCTACAACCGTGTGGTCTTGGAGCATGAAGAAGTTCGGGCAGGT
GCAGTAAGTGCTCTGGCCAAGTTTGGAGCTCAGAACGAAGAGATGTTGCCTAGTATCTTGGTGTTGCTGA
AGAGGTGTGTGATGGACGACGACAATGAAGTGAGAGACAGAGCCACCTTCTATCTGAACGTTCTGGAACA
GAAGCAGAAGGCTCTCAACGCAGGTTACATCCTAAATGGTCTGACCGTGTCCATCCCTGGTCTGGAGAAA
GCCCTGCAGCAGTACACACTCGAACCATCAGAGAAGCCATTTGACCTCAAGTCTGTGCCTCTGGCCACCA
CGCCTATGGCAGAGCAGAGACCAGAAAGCACCGCCACCGCAGCAGTCAAACAGCCGGAGAAGGTAGCAGC
CACACGGCAGGAGATTTTCCAAGAGCAGCTAGCAGCGGTGCCTGAGTTCCAGGGACTAGGGCCTCTCTTC
AAGTCCTCTCCTGAGCCAGTGGCCCTCACAGAGTCCGAGACCGAGTATGTCATCCGTTGCACCAAACACA
CCTTCTCTGATCACTTGGTGTTCCAGTTTGACTGCACAAACACCCTCAATGACCAGACTCTGGAGAATGT
CACAGTGCAGATGGAGCCCACTGAGGCATACGAAGTGCTCTCGTATGTGCCTGCGCGGAGCTTGCCCTAC
AACCAGCCTGGGACCTGCTACACACTAGTGGCTCTGCCCACTGAAGACCCCACAGCTGTGGCATGCACGT
TCAGCTGTGTGATGAAGTTCACTGTTAAGGACTGTGATCCCAACACAGGAGAAATCGATGAAGAAGGCTA
TGAGGATGAGTATGTGCTGGAGGATCTGGAAGTTACTGTGGCTGATCACATCCAAAAAGTCATGAAAGTG
AACTTTGAGGCAGCCTGGGATGAGGTTGGGGATGAATTTGAGAAGGAGGAAACGTTCACCCTGTCTACTA
TCAAGACACTCGAAGAGGCTGTGGGCAATATTGTGAAGTTCCTGGGAATGCATCCTTGTGAGAGGTCAGA
CAAAGTGCCAGAAAACAAGAACACCCACACGCTGCTGCTAGCTGGAGTATTCCGGGGTGGTCATGACATC
CTTGTGCGTTCTCGGCTTCTGCTTTTGGACACAGTGACGATGCAGGTGACAGCCAGAAGCTCAGAGGAGC
TGCCAGTAGATATCATCTTGGCATCCGTGGGCTAG

Translation (874 aa):
MLKKFDKKDEESGGGSNPLQHLEKSAVLQEARVFNETPINPRKCAHILTKILYLINQGEHLGTTEATEAF
FAMTKLFQSNDPTLRRMCYLTIKEMSCIAEDVIIVTSSLTKDMTGKEDNYRGPAVRALCQITDSTMLQAV
ERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVVKRWVNEAQEAASSDNIMVQYHALGLLYHVRKNDRLA
VSKMISKFTRHGLKSPFAYCMMIRVASKQLEEEDGSRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPGC
SAKELAPAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHPSAVTACNLDLENLVTDSNRSIATLAITTLLK
TGSESSIDRLMKQISSFMSEISDEFKVVVVQAISALCQKYPRKHAVLMNFLFTMLREEGGFEYKRAIVDC
IISIIEENSESKETGLSHLCEFIEDCEFTVLATRILHLLGQEGPKTNNPSKYIRFIYNRVVLEHEEVRAG
AVSALAKFGAQNEEMLPSILVLLKRCVMDDDNEVRDRATFYLNVLEQKQKALNAGYILNGLTVSIPGLEK
ALQQYTLEPSEKPFDLKSVPLATTPMAEQRPESTATAAVKQPEKVAATRQEIFQEQLAAVPEFQGLGPLF
KSSPEPVALTESETEYVIRCTKHTFSDHLVFQFDCTNTLNDQTLENVTVQMEPTEAYEVLSYVPARSLPY
NQPGTCYTLVALPTEDPTAVACTFSCVMKFTVKDCDPNTGEIDEEGYEDEYVLEDLEVTVADHIQKVMKV
NFEAAWDEVGDEFEKEETFTLSTIKTLEEAVGNIVKFLGMHPCERSDKVPENKNTHTLLLAGVFRGGHDI
LVRSRLLLLDTVTMQVTARSSEELPVDIILASVG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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