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Report for CCDS37122.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37122.1 Public Mus musculus 15 Tssk5 23 108 98 CCDS HistoryNCBI Gene:73542Re-query CCDS DB by CCDS ID:37122.1Re-query CCDS DB by GeneID:73542See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37122.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000071119.7 ENSMUSP00000071120.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000071119.7Link to Ensembl Protein Viewer:ENSMUSP00000071120.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000071119Re-query CCDS DB by Protein ID:ENSMUSP00000071120
Original member Current member NCBI NM_183099.2 NP_898922.2 Accepted alive Link to Nucleotide Sequence:NM_183099.2Link to Protein Sequence:NP_898922.2Re-query CCDS DB by Nucleotide ID:NM_183099Re-query CCDS DB by Protein ID:NP_898922Link to BLAST:NP_898922.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_898922.2 372 Q8C1R0 372 100% 0 0

Chromosomal Locations for CCDS 37122.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 76372099 76372265 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76372355 76372486 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76372861 76372976 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76373058 76373190 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76373508 76373563 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76373641 76373843 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76374023 76374130 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76374481 76374684 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1119 nt):
ATGAGGAGCAGCAGCTGGCGCAAGTCGGATCAGAGGGTGTTCATAGAACAGGTTCGAGAATGCATGAACA
ACGGTTACTTGCTCTCCTCCAAGAAGATCGGATCTGGTGCTTTCTCCAAGGTCTACCTGGCCTATGCAAC
ACGTGAGCGAATGAAGCACAACCCTAGGCTATCCTCTGACTTGCGGGGCAAGCGCCACACTATGGTGGCT
ATCAAGATTGTGTCCATGGCTGAAGCCCCGGCGGAATACTCCAGAAAGTTCCTGCCCCGTGAGATTTTAT
CACTCAATGCTACCTACAAGCACATGAACATAGTTCAACTGTATGAGACCTACCAGAACAGCCAGCGCTC
CTACCTGGTACTGGAGTTGGCAGCTAGAGGTGACCTGTTGGAGCATATCAACGCAGTGTCAGACCTCCGA
TGTTGCCCAGGACTGGAGGAGGAAGAAGCCCGAAGGCTGTTCTGGCAACTGGTCAGCGCTGTGGCCCACT
GCCACAATGTTGGCATTGTACACAGGGACTTGAAATGTGAAAATATCCTGTTGGATGACCAGGGCTTCAT
AAAGCTGACAGATTTTGGCTTTGCCAACTGGGTGGGGCTCAAGAACTCCCTGCTGAGCACCTTCTGTGGC
TCGGTGGCCTATACGGCCCCAGAGATCCTCATGAGCAAGAAGTACAACGGTGAGCAGGCTGATCTGTGGA
GCCTAGGGATCATCCTCCATGCTATGGTGTCTGGGAAGCTGCCCTTCAAGGAACACCAGCCCCATCGCAT
GCTGAACCTGATTCGTCGAGGTCCCATCTTCAGGCCAGGGCTGTCCCCAGAGTGCCGGGACCTGATCCGA
GGGCTGCTTCAGCTGCATCCATGTGAACGTCTGGACCTACAGCAGGTAGCTGCTCACTGCTGGATGCTGC
CTGCAGAACACATGCTGTCCTCTGCACTTGGAGCTCCCCGAGAACAGGATCATTCCTGGTCCACAGTAGC
CCCAGACAACACAGAGCCTGACAGAGACACCAGGCATGCCAGAAGCAAAGGCTCCAGCTCCTCCAGTGGC
AGGACATCTCCAAGGAGACCGTCTCTGGCCCAGCTGTGCAACACCTGGAAGCCTGCACCAGAGCAATAG

Translation (372 aa):
MRSSSWRKSDQRVFIEQVRECMNNGYLLSSKKIGSGAFSKVYLAYATRERMKHNPRLSSDLRGKRHTMVA
IKIVSMAEAPAEYSRKFLPREILSLNATYKHMNIVQLYETYQNSQRSYLVLELAARGDLLEHINAVSDLR
CCPGLEEEEARRLFWQLVSAVAHCHNVGIVHRDLKCENILLDDQGFIKLTDFGFANWVGLKNSLLSTFCG
SVAYTAPEILMSKKYNGEQADLWSLGIILHAMVSGKLPFKEHQPHRMLNLIRRGPIFRPGLSPECRDLIR
GLLQLHPCERLDLQQVAAHCWMLPAEHMLSSALGAPREQDHSWSTVAPDNTEPDRDTRHARSKGSSSSSG
RTSPRRPSLAQLCNTWKPAPEQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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