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Report for CCDS15300.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15300.1 Public Mus musculus 1 Prelp 23 108 98 CCDS HistoryNCBI Gene:116847Re-query CCDS DB by CCDS ID:15300.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15300.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000048432.5 ENSMUSP00000048803.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000048432.5Link to Ensembl Protein Viewer:ENSMUSP00000048803.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000048432Re-query CCDS DB by Protein ID:ENSMUSP00000048803
Original member Current member NCBI NM_054077.4 NP_473418.3 Accepted alive Link to Nucleotide Sequence:NM_054077.4Link to Protein Sequence:NP_473418.3Re-query CCDS DB by Nucleotide ID:NM_054077Re-query CCDS DB by Protein ID:NP_473418Link to BLAST:NP_473418.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_473418.3 378 Q9JK53 378 100% 0 0

Chromosomal Locations for CCDS 15300.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 133912606 133912781 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 133914445 133915405 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1137 nt):
ATGAGGGCATCCTTCTTCTGGCTCCTCCCACTTCTCCTCATCTTGGCCTCAGTGGCCCAAGGCCAACCGA
CAAGACCAAAACCTGGGATTAGGCGTAAACCCAAGCCGAGGCCCACACCCAGATTTCCTCAGGCCCCCGA
GCCAGCAGAGCCGACAGACCTGCCTCCACCTCTTCCTCCCGGCCCTCCATCTGTCTTCCCTGACTGTCCA
CGGGAATGCTACTGCCCCCCTGACTTCCCGTCAGCCCTCTACTGTGACAGCCGAAACCTGCGAAGGGTCC
CCGTCATCCCACCCCGAATCCATTACCTTTACTTGCAGAACAACTTCATCACTGAGCTTCCTCTGGAATC
TTTCCAGAATGCCACGGGCCTGAGGTGGGTCAACCTGGACAACAACCGAATTCGCAAGGTGGACCAGAGA
GTGCTGGGGAAGCTCCCCAGCCTGGCATTCCTCTACATGGAGAAGAACCAGCTGGAAGAGGTGCCATCAG
CTCTGCCCCGGAACTTGGAACAGCTGAGGCTGAGCCAGAACCTCATTTCCAGGATCCCGCCCGGAGTGTT
CAGCAAGCTGGAGAACCTGCTGCTCCTGGATCTGCAGCACAATCGGCTGAGCGACGGCGTCTTCAAGGCC
GACACCTTCCAGGGCCTCAAAAACCTCATGCAGCTCAATCTAGCCCACAACATCCTGAGAAAGATGCCCC
CCAAAGTCCCCCAAGCCATCCACCAGCTCTACCTGGATAGCAACAAGATCGAGACCATCCCCAACGGGTA
CTTCAAGGACTTCCCCAACCTGGCCTTCATCCGCATGAACTACAACAAACTGTCAGATCGCGGGCTCCCC
AAGAACTCCTTCAACATCTCCAACTTGCTGGTGCTCCACCTGTCTCACAACAAGATCAGCAACGTGCCGG
CCATCAGCAACAAGCTGGAACACCTGTACCTCAACAACAATAGCATAGAGAAAATCAACGGGACCCAGAT
TTGCCCCAACAACCTAGTGGCCTTCCATGACTTCTCCTCGGATCTGGAAAACGTGCCCCACCTGCGCTAC
CTGCGGCTGGATGGAAATTTTCTGAAGCCTCCCATCCCACTGGACCTCATGATGTGCTTCCGCCTCCTGC
AGTCCGTGGTCATCTAG

Translation (378 aa):
MRASFFWLLPLLLILASVAQGQPTRPKPGIRRKPKPRPTPRFPQAPEPAEPTDLPPPLPPGPPSVFPDCP
RECYCPPDFPSALYCDSRNLRRVPVIPPRIHYLYLQNNFITELPLESFQNATGLRWVNLDNNRIRKVDQR
VLGKLPSLAFLYMEKNQLEEVPSALPRNLEQLRLSQNLISRIPPGVFSKLENLLLLDLQHNRLSDGVFKA
DTFQGLKNLMQLNLAHNILRKMPPKVPQAIHQLYLDSNKIETIPNGYFKDFPNLAFIRMNYNKLSDRGLP
KNSFNISNLLVLHLSHNKISNVPAISNKLEHLYLNNNSIEKINGTQICPNNLVAFHDFSSDLENVPHLRY
LRLDGNFLKPPIPLDLMMCFRLLQSVVI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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