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Report for CCDS16988.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16988.1 Public Mus musculus 2 Lbp 23 108 98 CCDS HistoryNCBI Gene:16803Re-query CCDS DB by CCDS ID:16988.1Re-query CCDS DB by GeneID:16803See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16988.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000016168.8 ENSMUSP00000016168.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000016168.8Link to Ensembl Protein Viewer:ENSMUSP00000016168.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000016168Re-query CCDS DB by Protein ID:ENSMUSP00000016168
Original member Current member NCBI NM_008489.2 NP_032515.2 Accepted alive Link to Nucleotide Sequence:NM_008489.2Link to Protein Sequence:NP_032515.2Re-query CCDS DB by Nucleotide ID:NM_008489Re-query CCDS DB by Protein ID:NP_032515Link to BLAST:NP_032515.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032515.2 481 Q61805 481 100% 0 0

Chromosomal Locations for CCDS 16988.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 158306670 158306793 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 158308681 158308795 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 158309601 158309729 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 158313473 158313628 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 158314153 158314216 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 158317537 158317600 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 158319672 158319763 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 158320264 158320440 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 158322055 158322114 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 158324509 158324676 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 158325707 158325774 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 158326228 158326270 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 158327517 158327580 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 158328346 158328422 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 158331906 158331950 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1446 nt):
ATGAAGGCTGGGACTGGACCTCTGCTCTCTACATTGCTGGGGCTGCTGTTCCTGTCCATACAGGGAACTG
GCGGTGTCAACCCCGGTGTGGTGGCCAGGATCACCGACAAGGGCCTGGCCTACGCGGCCAAGGAGGGGCT
GGTGGCTCTGCAGAGAGAGCTGTACAAGATCACACTACCGGACTTCAGCGGGGACTTCAAGATCAAGGCC
GTGGGTCGTGGGCAGTACGAGTTTCATAGCCTGGAGATTCAGAACTGTGAGCTGCGTGGCTCCTCTCTGA
AGCTGCTCCCAGGCCAGGGCCTGAGTCTCGCCATCTCTGACTCTTCCATCGGTGTCCGAGGCAAATGGAA
GGTGCGCAAATCCTTCCTGAAACTTCATGGCTCCTTTGACCTGGATGTCAAAGGTGTCACCATTTCAGTG
GACCTCCTCCTGGGCATGGATCCCTCAGGGCGGCCCACAGTCTCTGCCTCTGGGTGCAGCAGCCGCATTT
GTGATTTGGATGTGCACATATCAGGAAATGTGGGGTGGCTGCTGAATCTCTTCCACAACCAGATCGAGTC
GAAGCTCCAGAAAGTACTGGAGAATAAGGTTTGTGAGATGATCCAGAAGTCTGTGACCTCTGACCTGCAG
CCTTATCTCCAGACTCTGCCAGTCACAGCAGAGATCGACAATGTCCTGGGCATTGACTACAGTTTGGTGG
CGGCTCCCCAAGCGAAGGCCCAGGTGCTGGATGTCATGTTTAAGGGTGAAATTTTTAATCGGAATCACCG
CTCTCCAGTTGCTACCCCCACTCCGACCATGAGCCTACCTGAGGACAGTAAGCAAATGGTCTACTTTGCC
ATCTCAGATTATGCCTTCAACATAGCCAGCCGGGTTTATCACCAGGCTGGGTACCTGAATTTTTCCATCA
CAGATGACATGTTACCACATGACTCCGGCATCCGGTTGAACACCAAGGCCTTCCGTCCCTTCACTCCCCA
GATATACAAAAAGTATCCCGACATGAAATTGGAGCTCCTTGGAACAGTGGTCTCTGCCCCGATTCTGAAT
GTCAGTCCTGGGAATCTGTCCTTGGCCCCACAGATGGAGATCGAAGGCTTTGTGATCCTGCCCACCTCCG
CCCGGGAACCTGTCTTCCGGCTTGGCGTGGTCACTAATGTATTTGCCTCATTAACTTTCAACAACAGCAA
GGTTACCGGGATGCTGCATCCAGACAAGGCACAAGTGAGACTGATCGAATCCAAAGTCGGCATGTTCAAT
GTGAACCTGTTCCAGGCATTCCTTAACTACTACCTTCTCAACAGCCTCTACCCTGATGTCAATGCTGAGC
TGGCCCAGGGCTTCCCCCTCCCTCTGCCAAGGCATATTCAGCTCCACGACCTCGACTTCCAGATCCGCAA
GGACTTCTTATACTTGGGTGCCAATGTCCAGTATATGAGAGTCTGA

Translation (481 aa):
MKAGTGPLLSTLLGLLFLSIQGTGGVNPGVVARITDKGLAYAAKEGLVALQRELYKITLPDFSGDFKIKA
VGRGQYEFHSLEIQNCELRGSSLKLLPGQGLSLAISDSSIGVRGKWKVRKSFLKLHGSFDLDVKGVTISV
DLLLGMDPSGRPTVSASGCSSRICDLDVHISGNVGWLLNLFHNQIESKLQKVLENKVCEMIQKSVTSDLQ
PYLQTLPVTAEIDNVLGIDYSLVAAPQAKAQVLDVMFKGEIFNRNHRSPVATPTPTMSLPEDSKQMVYFA
ISDYAFNIASRVYHQAGYLNFSITDDMLPHDSGIRLNTKAFRPFTPQIYKKYPDMKLELLGTVVSAPILN
VSPGNLSLAPQMEIEGFVILPTSAREPVFRLGVVTNVFASLTFNNSKVTGMLHPDKAQVRLIESKVGMFN
VNLFQAFLNYYLLNSLYPDVNAELAQGFPLPLPRHIQLHDLDFQIRKDFLYLGANVQYMRV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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