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Report for CCDS37226.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37226.1 Public Mus musculus 15 Rarg 23 108 98 CCDS HistoryNCBI Gene:19411Re-query CCDS DB by CCDS ID:37226.1Re-query CCDS DB by GeneID:19411See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37226.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000063339.13 ENSMUSP00000067266.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000063339.13Link to Ensembl Protein Viewer:ENSMUSP00000067266.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000063339Re-query CCDS DB by Protein ID:ENSMUSP00000067266
Original member NCBI NM_001042727.2 NP_001036192.1 Updated not alive Link to Nucleotide Sequence:NM_001042727.2Link to Protein Sequence:NP_001036192.1Re-query CCDS DB by Nucleotide ID:NM_001042727Re-query CCDS DB by Protein ID:NP_001036192
Current member NCBI NM_001042727.3 NP_001036192.1 Accepted alive Link to Nucleotide Sequence:NM_001042727.3Link to Protein Sequence:NP_001036192.1Re-query CCDS DB by Nucleotide ID:NM_001042727Re-query CCDS DB by Protein ID:NP_001036192Link to BLAST:NP_001036192.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001036192.1 447 P18911-2 447 100% 0 0

Chromosomal Locations for CCDS 37226.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 102236024 102236223 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 102238805 102238963 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 102239390 102239594 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 102239858 102240034 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 102240128 102240288 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 102241058 102241199 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 102241836 102241984 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 102246060 102246210 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1344 nt):
ATGTACGACTGCATGGAATCGTTTGTCCCGGGTCCGCGACGGCTGTATGGGGCGGCCGGGCCCGGGGCCG
GCTTACTACGCAGAGCCACTGGCAGCTCCTGCTTCGCCGGACTTGAGTCTTTTGCCTGGGCACAGCCTGC
CAGTCTACAATCGGTGGAGACACAGAGCACCAGCTCGGAGGAGATGGTACCCAGCTCTCCCTCACCCCCA
CCACCTCCTCGGGTCTATAAGCCATGCTTTGTATGCAATGACAAGTCTTCTGGCTACCACTATGGGGTCA
GCTCCTGTGAAGGCTGCAAGGGCTTCTTCAGACGCAGCATTCAGAAAAACATGGTGTATACATGTCACCG
TGACAAAAACTGTATCATCAACAAGGTCACCAGAAATCGATGCCAGTACTGCAGGCTACAAAAGTGTTTC
GAAGTGGGCATGTCCAAGGAAGCTGTAAGGAACGATCGAAACAAGAAGAAAAAGGAGGTAAAAGAGGAGG
GCTCGCCCGACAGCTATGAACTGAGTCCACAGTTAGAGGAACTCATCACCAAGGTCAGCAAAGCCCACCA
GGAGACTTTTCCCTCACTCTGCCAGCTGGGCAAGTACACCACGAACTCCAGTGCAGATCACCGGGTGCAG
CTGGACCTGGGGCTGTGGGACAAGTTCAGCGAGCTGGCCACCAAATGCATCATCAAGATTGTGGAGTTTG
CGAAGCGGCTGCCTGGTTTTACAGGGCTCAGCATTGCCGACCAGATCACGCTGCTCAAGGCTGCTTGTCT
GGACATCCTAATGCTGCGGATCTGTACAAGGTATACCCCAGAGCAGGACACTATGACATTCTCGGATGGG
CTGACCCTGAACCGAACCCAGATGCACAATGCTGGCTTTGGGCCCCTTACAGACCTCGTCTTTGCCTTTG
CCGGGCAGCTGCTGCCCCTGGAGATGGATGACACCGAGACTGGGCTACTTAGTGCTATCTGCCTCATCTG
TGGAGACCGAATGGACCTGGAAGAGCCCGAGAAGGTGGACAAGCTGCAGGAGCCCCTGCTGGAAGCCCTG
AGGCTCTATGCCCGGCGACGGAGACCCAGCCAACCCTACATGTTCCCAAGGATGCTGATGAAAATCACCG
ACCTCCGGGGCATCAGCACTAAGGGAGCAGAAAGGGCTATAACCCTGAAGATGGAGATTCCAGGCCCGAT
GCCACCCCTGATCCGAGAGATGCTGGAGAACCCGGAGATGTTTGAGGACGACTCCTCGAAGCCTGGCCCC
CACCCCAAGGCTTCCAGTGAGGACGAAGCTCCAGGGGGCCAGGGCAAAAGGGGCCAAAGTCCCCAACCTG
ACCAGGGGCCCTGA

Translation (447 aa):
MYDCMESFVPGPRRLYGAAGPGAGLLRRATGSSCFAGLESFAWAQPASLQSVETQSTSSEEMVPSSPSPP
PPPRVYKPCFVCNDKSSGYHYGVSSCEGCKGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQKCF
EVGMSKEAVRNDRNKKKKEVKEEGSPDSYELSPQLEELITKVSKAHQETFPSLCQLGKYTTNSSADHRVQ
LDLGLWDKFSELATKCIIKIVEFAKRLPGFTGLSIADQITLLKAACLDILMLRICTRYTPEQDTMTFSDG
LTLNRTQMHNAGFGPLTDLVFAFAGQLLPLEMDDTETGLLSAICLICGDRMDLEEPEKVDKLQEPLLEAL
RLYARRRRPSQPYMFPRMLMKITDLRGISTKGAERAITLKMEIPGPMPPLIREMLENPEMFEDDSSKPGP
HPKASSEDEAPGGQGKRGQSPQPDQGP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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