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Report for CCDS19333.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19333.1 Public Mus musculus 5 Cnga1 23 108 98 CCDS HistoryNCBI Gene:12788Re-query CCDS DB by CCDS ID:19333.1Re-query CCDS DB by GeneID:12788See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19333.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000087213.11 ENSMUSP00000084464.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000087213.11Link to Ensembl Protein Viewer:ENSMUSP00000084464.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000087213Re-query CCDS DB by Protein ID:ENSMUSP00000084464
Original member Current member EBI ENSMUST00000169997.5 ENSMUSP00000132329.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000169997.5Link to Ensembl Protein Viewer:ENSMUSP00000132329.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000169997Re-query CCDS DB by Protein ID:ENSMUSP00000132329
Original member Current member EBI ENSMUST00000201463.3 ENSMUSP00000143881.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000201463.3Link to Ensembl Protein Viewer:ENSMUSP00000143881.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000201463Re-query CCDS DB by Protein ID:ENSMUSP00000143881
Original member Current member NCBI NM_007723.2 NP_031749.2 Accepted alive Link to Nucleotide Sequence:NM_007723.2Link to Protein Sequence:NP_031749.2Re-query CCDS DB by Nucleotide ID:NM_007723Re-query CCDS DB by Protein ID:NP_031749Link to BLAST:NP_031749.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_031749.2 684 P29974 684 100% 0 0

Chromosomal Locations for CCDS 19333.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 72604115 72605529 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 72609455 72609561 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 72610809 72610916 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 72612161 72612271 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 72612361 72612402 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 72616722 72616784 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 72618168 72618269 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 72619012 72619118 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2055 nt):
ATGAAGACAAATATTATCAATACGTGGCATTCCTTCGTAAATATTCCCAATGTGATCGTACCAGCCATTG
AAAAGGAAATCCGGCGGATGGAAAATGGAGCGTGCAGCTCCTTTTCTGACGATGACAATGGCTCTCTGTC
TGAAGAATCAGAGAATGAGGACTCTTTCTTTAGAAGCAACTCGTACAAAAGGCGAGGACCATCACAGAGG
GAGCAGCACTTGCCAGGTACTATGGCTCTTTTCAATGTCAACAACAGCAGCAACAAAGACCAAGAGCCAA
AGGAGAAAAAGAAAAAAAAGAAGGAAAAGAAGAGCAAGGCCGATGATAAAAATGAAAATAAAAAGGACCC
AGAGAAGAAAAAGAAGAAGGAAAAGGAAAAAGAGAAGAAAAAGAAGGAGGAGAAAACCAAAGAGAAGAAA
GAAGAGGAGAAGAAAGAAGTCGTGGTTATTGATCCTTCAGGAAACACATACTACAACTGGCTGTTTTGTA
TCACTTTGCCTGTGATGTACAACTGGACGATGATTATTGCAAGAGCATGTTTTGATGAACTCCAGTCTGA
TTACCTAGAATACTGGCTCATTTTTGATTACGTATCAGATGTAGTCTATCTTGCCGATATGTTTGTACGA
ACAAGGACAGGTTACCTGGAACAAGGGCTGCTAGTGAAAGACAGAATGAAACTCATAGAGAAATACAAAG
CAAACCTGCAGTTTAAACTTGATGTTCTGTCAGTGATACCGACCGATCTGCTGTACATCAAGTTTGGGTG
GAACTATCCAGAAATCAGGTTAAACCGGCTGTTAAGGATCTCTCGAATGTTTGAGTTCTTCCAGAGGACG
GAAACAAGGACCAACTACCCAAACATCTTTAGGATTTCGAACCTTGTGATGTACATCGTCATCATCATCC
ACTGGAACGCTTGTGTGTATTATTCCATCTCAAAAGCTATTGGATTTGGGAATGACACATGGGTCTACCC
TGATGTTAATGATCCTGAATTCGGCCGTTTAGCTAGAAAATATGTCTACAGCCTTTATTGGTCTACTTTG
ACTTTGACAACCATTGGTGAAACTCCACCTCCCGTGCTGGATTCTGAGTACATCTTTGTGGTGGTAGACT
TCTTAATTGGAGTTTTAATTTTCGCCACCATTGTCGGTAACATAGGTTCCATGATTTCCAATATGAATGC
AGCCCGGGCAGAATTTCAATCAAGAGTTGATGCTATCAAACAGTACATGAATTTTCGAAATGTAAGCAAA
GATATGGAAAAGAGGGTTATTAAATGGTTTGACTACCTGTGGACCAACAAAAAAACAGTGGATGAGAGAG
AAGTCCTGAGATACCTCCCTGACAAACTAAGGGCAGAAATTGCCATCAACGTTCATCTAGACACGTTAAA
AAAGGTTCGCATCTTTGCTGACTGTGAAGCTGGTCTGTTGGTGGAGTTGGTGTTGAAACTACAACCCCAG
GTGTATAGTCCCGGAGATTACATATGCAAGAAAGGGGACATCGGGCGGGAGATGTACATCATCAAGGAAG
GCAAACTTGCTGTGGTGGCAGATGACGGAATTACACAGTTTGTGGTGTTGAGTGACGGCAGTTACTTTGG
TGAGATCAGCATTCTTAATATCAAAGGCAGCAAGGCTGGCAACCGAAGAACAGCCAACATTAAGAGCATC
GGCTACTCGGACCTGTTCTGCCTCTCCAAAGATGACCTCATGGAAGCTCTTACAGAGTACCCAGATGCCA
AAACTATGCTGGAAGAGAAAGGGAGGCAGATCTTAATGAAAGATGGTCTGCTGGATATAAACATTGCAAA
TATGGGCAGTGACCCTAAAGACCTGGAAGAGAAGGTCACTCGAATGGAGGGGTCAGTGGACCTCCTGCAA
ACGCGATTTGCCCGTATCTTGGCTGAATATGAGTCGATGCAGCAGAAACTCAAGCAAAGATTAACCAAGG
TCGAGAAATTTCTGAAACCGCTTATTGAAACAGAATTTTCAGCTCTGGAGGAACCCGGAGGGGAAAGTGA
GCTCACGGAGTCTCTACAGGACTGA

Translation (684 aa):
MKTNIINTWHSFVNIPNVIVPAIEKEIRRMENGACSSFSDDDNGSLSEESENEDSFFRSNSYKRRGPSQR
EQHLPGTMALFNVNNSSNKDQEPKEKKKKKKEKKSKADDKNENKKDPEKKKKKEKEKEKKKKEEKTKEKK
EEEKKEVVVIDPSGNTYYNWLFCITLPVMYNWTMIIARACFDELQSDYLEYWLIFDYVSDVVYLADMFVR
TRTGYLEQGLLVKDRMKLIEKYKANLQFKLDVLSVIPTDLLYIKFGWNYPEIRLNRLLRISRMFEFFQRT
ETRTNYPNIFRISNLVMYIVIIIHWNACVYYSISKAIGFGNDTWVYPDVNDPEFGRLARKYVYSLYWSTL
TLTTIGETPPPVLDSEYIFVVVDFLIGVLIFATIVGNIGSMISNMNAARAEFQSRVDAIKQYMNFRNVSK
DMEKRVIKWFDYLWTNKKTVDEREVLRYLPDKLRAEIAINVHLDTLKKVRIFADCEAGLLVELVLKLQPQ
VYSPGDYICKKGDIGREMYIIKEGKLAVVADDGITQFVVLSDGSYFGEISILNIKGSKAGNRRTANIKSI
GYSDLFCLSKDDLMEALTEYPDAKTMLEEKGRQILMKDGLLDINIANMGSDPKDLEEKVTRMEGSVDLLQ
TRFARILAEYESMQQKLKQRLTKVEKFLKPLIETEFSALEEPGGESELTESLQD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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