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Report for CCDS36543.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36543.1 Public Mus musculus 12 Syne3 23 108 98 CCDS HistoryNCBI Gene:212073Re-query CCDS DB by CCDS ID:36543.1Re-query CCDS DB by GeneID:212073See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36543.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000067005.10 ENSMUSP00000065771.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000067005.10Link to Ensembl Protein Viewer:ENSMUSP00000065771.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000067005Re-query CCDS DB by Protein ID:ENSMUSP00000065771
Original member Current member EBI ENSMUST00000109927.1 ENSMUSP00000105553.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109927.1Link to Ensembl Protein Viewer:ENSMUSP00000105553.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000109927Re-query CCDS DB by Protein ID:ENSMUSP00000105553
Original member NCBI NM_172500.3 NP_766088.2 Updated not alive Link to Nucleotide Sequence:NM_172500.3Link to Protein Sequence:NP_766088.2Re-query CCDS DB by Nucleotide ID:NM_172500Re-query CCDS DB by Protein ID:NP_766088
Current member NCBI NM_172500.4 NP_766088.2 Accepted alive Link to Nucleotide Sequence:NM_172500.4Link to Protein Sequence:NP_766088.2Re-query CCDS DB by Nucleotide ID:NM_172500Re-query CCDS DB by Protein ID:NP_766088Link to BLAST:NP_766088.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766088.2 888 Q4FZC9-2 888 100% 0 0

Chromosomal Locations for CCDS 36543.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 104932165 104932371 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 104939582 104939620 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 104940606 104940755 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 104943305 104943463 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 104945081 104945210 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 104946566 104946738 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 104946892 104947053 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 104952986 104953120 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 104954163 104954306 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 104955527 104955709 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 104957954 104958128 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 104959397 104959530 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 104961326 104961673 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 104963171 104963332 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 104967882 104968191 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 104975738 104975793 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2667 nt):
ATGACAACACGAAGGGGCCCCGAGCGGCCCTGGAGGCAAGGCTTCGAGAGACAGAGTCGCATCGAGTGGG
TGTGGCTGCACTGGAGTGAGTACCTGCTGGCCCAGGATGAGTTTTACCGCTGGTTCCAGAAGATGGTGGT
CGCACTGGAGCCCCCCGTGGAGCTGCAGCTGGGCTTGAAGGAGAAGCAATGGCAGCTGAGCCACGCCCAG
GTGCTGCTGCACAACGTGGACAATCAGGCTGTGCTCCTGGACAGGCTGTTGGAGGAGGCGGGCTCCCTGT
TCAGCAGGATCGGAGACCCCAGCGTGGATGAAGATGCCCAGAAGAGGATGAAGGCTGAGTACGATGCCGT
GAAGGCCAGAGCCCAGCGCAGGGTGGACCTCCTGGCCCAGGTGGCCCAGGACCATGAGCAGTACCGGGAG
GACGTGAATGAGTTCCAGCTGTGGCTGAAGGCGGTGGTGGAGAAGGTGCACAGCTGTCTGGGGCGGAACT
GCAAGCTGGCCACAGAACTTCGTCTCTCTACGCTGCAGGACATCGCCAAGGATTTCCCTAGGGGTGAGGA
GTCTCTGAAAAGATTGGAGGAACAGGCTGTGGGTGTCATTCAAAACACCTCTCCCTTGGGTGCAGAGAAG
ATCTCAGGGGAGCTGGAGGAGATGCGGGGTGTCCTGGAGAAGCTGAGAGTCCTCTGGAAAGAGGAGGAAG
GGAGGCTGCGGGGCCTGCTCCAGTCCAGGGGGGACTGTGAGCAGCAGATCCAACAGCTGGAGGCAGAACT
GGGAGACTTCAAGAAAAGCCTTCAGAGGCTGGCCCAGGAGGGCTTGGAGCCCACGGTGAAGACAGCCACA
GAGGATGAGCTGGTGGCCCAGTGGAGGCTGTTCTCGGGGACTCGGGCTGCACTGGCTTCAGAGGAACCCC
GTGTAGACCGGTTACAAACTCAACTGAAGAAACTTGTCACCTTCCCGGACCTGCAGTCACTCTCTGACAG
CGTGGTAGCCACCATTCAGGAATACCAAAGTATGAAGGGGAAGAATACCAGGCTCCACAATGCGACCCGG
GCAGAGCTGTGGCAGCGTTTCCAGCGGCCCCTAAATGACCTGCAGCTGTGGAAGGCCCTGGCCCAGAGGC
TCCTGGACATCACGGCCAGCCTGCCTGACCTGGCCTCCATTCACACCTTTCTACCCCAGATTGAGGCGGC
CCTCACGGAAAGCTCTCGCCTGAAAGAGCAGCTGGCGATGCTGCAGCTGAAGACCGACCTGCTGGGCAGC
ATCTTTGGCCAGGAGAGAGCAGCCACCCTCCTGGAGCAGGTGACAAGTTCTGTGAGGGACAGAGACCTAC
TGCATAACAGCCTTCTTCAGCGGAAGAGCAAACTTCAGAGCCTGCTTGTTCAGCACAAGGACTTTGGGGT
GGCTTTTGATCCCCTAAACAGGAAGCTCCTAGACCTCCAGGCCAGGATCCAAGCAGAGAAAGGGCTTCCG
AGGGACCTTCCTGGAAAGCAGGTCCAGCTCCTAAGGTTGCAGGGGCTGCAGGAAGAGGGGCTGGATCTGG
GGACACAGATCGAGGCTGTGAGGCCTCTTGCCCATGGGAACTCTAAGCACCAGCAGAAAGTAGACCAGAT
CTCCTGTGACCAGCAAGCCCTGCAGAGGTCCCTGGAGGATCTCGTGGACAGGTGTCAGCAGAACGTACGG
GAACATTGTACCTTCAGTCACAGGCTGTCGGAGCTGCAGCTATGGATCACCATGGCCACACAGACATTAG
AGTCACACCAAGGGGATGTGCGTCTGTGGGATGCTGAGTCCCAAGAGGCTGGACTCGAGACGCTGCTGTC
TGAAATCCCAGAGAAAGAGGTCCAGGTGTCCCTGCTCCAAGCACTGGGCCAGCTTGTGATGAAGAAGTCT
TCCCCAGAAGGGGCAACCATGGTCCAGGAGGAGCTGAGGAAGCTGATGGAGTCTTGGCAGGCCCTGCGGC
TGCTAGAGGAGAACATGCTGAGTCTCATGAGAAACCAGCAGCTGCAGAGGACAGAGGTGGACACGGGGAA
GAAGCAGGTGTTCACCAACAACATCCCAAAGGCCGGCTTTCTCATCAACCCTCAGGACCCCATTCCCAGG
AGACAGCATGGGGCAAACCCACTGGAAGGACACGACCTCCCTGAAGATCATCCCCAGCTCCTGAGGGACT
TTGAACAGTGGCTGCAGGCAGAAAACTCCAAGCTACGTAGAATCATCACAATGAGAGTGGCCACAGCCAA
GGACTTGAGGACCAGAGAGGTGAAGCTGCAGGAGCTGGAGGCCCGAATCCCAGAAGGCCAGCACCTCTTT
GAGAACCTGCTTCGTCTCAGGCCGGCAAGGGACCCCTCCAACGAGCTGGAAGATCTGCGCTACCGGTGGA
TGCTGTACAAGTCCAAGCTCAAGGACTCTGGCCACCTGCTGACCGAGAGTTCTCCGGGGGAGCTGACTGC
ATTCCAGAAGAGTCGGAGGCAGAAGCGGTGGAGTCCCTGCTCTCTCCTACAGAAAGCATGCCGTGTGGCA
CTGCCATTGCAGCTGTTGCTCCTGCTCTTTCTGCTGCTGCTGTTCCTGCTGCCGGCCGGCGAGGAGGAGC
GCAGCTGCGCCCTGGCCAACAACTTCGCCCGCTCCTTTGCGCTCATGCTTCGGTACAATGGCCCCCCGCC
CACCTAG

Translation (888 aa):
MTTRRGPERPWRQGFERQSRIEWVWLHWSEYLLAQDEFYRWFQKMVVALEPPVELQLGLKEKQWQLSHAQ
VLLHNVDNQAVLLDRLLEEAGSLFSRIGDPSVDEDAQKRMKAEYDAVKARAQRRVDLLAQVAQDHEQYRE
DVNEFQLWLKAVVEKVHSCLGRNCKLATELRLSTLQDIAKDFPRGEESLKRLEEQAVGVIQNTSPLGAEK
ISGELEEMRGVLEKLRVLWKEEEGRLRGLLQSRGDCEQQIQQLEAELGDFKKSLQRLAQEGLEPTVKTAT
EDELVAQWRLFSGTRAALASEEPRVDRLQTQLKKLVTFPDLQSLSDSVVATIQEYQSMKGKNTRLHNATR
AELWQRFQRPLNDLQLWKALAQRLLDITASLPDLASIHTFLPQIEAALTESSRLKEQLAMLQLKTDLLGS
IFGQERAATLLEQVTSSVRDRDLLHNSLLQRKSKLQSLLVQHKDFGVAFDPLNRKLLDLQARIQAEKGLP
RDLPGKQVQLLRLQGLQEEGLDLGTQIEAVRPLAHGNSKHQQKVDQISCDQQALQRSLEDLVDRCQQNVR
EHCTFSHRLSELQLWITMATQTLESHQGDVRLWDAESQEAGLETLLSEIPEKEVQVSLLQALGQLVMKKS
SPEGATMVQEELRKLMESWQALRLLEENMLSLMRNQQLQRTEVDTGKKQVFTNNIPKAGFLINPQDPIPR
RQHGANPLEGHDLPEDHPQLLRDFEQWLQAENSKLRRIITMRVATAKDLRTREVKLQELEARIPEGQHLF
ENLLRLRPARDPSNELEDLRYRWMLYKSKLKDSGHLLTESSPGELTAFQKSRRQKRWSPCSLLQKACRVA
LPLQLLLLLFLLLLFLLPAGEEERSCALANNFARSFALMLRYNGPPPT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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