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Report for CCDS18734.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18734.1 Public Mus musculus 4 Rpa2 23 108 98 CCDS HistoryNCBI Gene:19891Re-query CCDS DB by CCDS ID:18734.1Re-query CCDS DB by GeneID:19891See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18734.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000102561.10 ENSMUSP00000099621.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000102561.10Link to Ensembl Protein Viewer:ENSMUSP00000099621.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000102561Re-query CCDS DB by Protein ID:ENSMUSP00000099621
Original member NCBI NM_011284.3 NP_035414.3 Updated not alive Link to Nucleotide Sequence:NM_011284.3Link to Protein Sequence:NP_035414.3Re-query CCDS DB by Nucleotide ID:NM_011284Re-query CCDS DB by Protein ID:NP_035414
Current member NCBI NM_011284.4 NP_035414.3 Accepted alive Link to Nucleotide Sequence:NM_011284.4Link to Protein Sequence:NP_035414.3Re-query CCDS DB by Nucleotide ID:NM_011284Re-query CCDS DB by Protein ID:NP_035414Link to BLAST:NP_035414.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035414.3 270 Q62193 270 100% 0 0

Chromosomal Locations for CCDS 18734.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 132768457 132768466 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 132768680 132768786 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 132770546 132770647 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 132771841 132771954 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 132773827 132773901 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 132775017 132775133 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 132776248 132776355 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 132776653 132776747 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 132777790 132777874 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (813 nt):
ATGTGGAATAGCGGATTCGAAAGCTTCAGCAGCTCCACCTATGGCGGAGCAGGCGGCTACACGCAGTCCC
CCGGTGGCTTCGGGTCGCCCACACCGTCGCAGGCGGAGAAGAAATCGAGAGTCCGAGCCCAGCATATTGT
GCCCTGTACCATATCCCAGCTGCTTTCTGCTACTCTGACTGATGAAGTGTTCAGAATTGGAGATGTCGAG
ATTTCACAGGTCACTATTGTGGGGATAATCAGACATGCGGAGAAGGCTCCAACCAACATTGTTTACAAGA
TAGACGATATGACAGCTCCGCCCATGGATGTTCGTCAGTGGGTTGACACGGATGATGCCAGTGGTGAGAA
CGCCGTGGTTCCTCCCGAAACATACGTGAAAGTCGCTGGTCACCTCAGGTCTTTCCAGAACAAAAAGAGC
TTGGTGGCCTTTAAGATCATTCCTCTGGAAGACATGAATGAGTTCACCGCACACATCCTGGAAGTGGTCA
ATTCACACATGATGCTCAGCAAGCCCAACAGCCAGGCCTCTGCAGGGAGACCATCGATGAGCAACCCAGG
AATGAGTGAGCCGGGGAACTTCAGCGGGAATAACTTCATGCCAGCAAATGGCCTCACTGTGGTCCAAAAC
CAGGTGCTGAATTTGATCAAGGCTTGCCCAAGACCTGAAGGCCTGAACTTCCAGGACCTCAGGAGCCAGC
TCCAGCATATGCCTGTTCCCTCAATCAAGCAAGCAGTGGATTTTCTGTGCAACGAGGGCCACATTTACTC
TACTGTGGACGACGATCACTTTAAGTCTACAGATGCAGAGTGA

Translation (270 aa):
MWNSGFESFSSSTYGGAGGYTQSPGGFGSPTPSQAEKKSRVRAQHIVPCTISQLLSATLTDEVFRIGDVE
ISQVTIVGIIRHAEKAPTNIVYKIDDMTAPPMDVRQWVDTDDASGENAVVPPETYVKVAGHLRSFQNKKS
LVAFKIIPLEDMNEFTAHILEVVNSHMMLSKPNSQASAGRPSMSNPGMSEPGNFSGNNFMPANGLTVVQN
QVLNLIKACPRPEGLNFQDLRSQLQHMPVPSIKQAVDFLCNEGHIYSTVDDDHFKSTDAE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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