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Report for CCDS85148.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
85148.1 Public Mus musculus 6 Ninj2 23 108 98 CCDS HistoryNCBI Gene:29862Re-query CCDS DB by CCDS ID:85148.1Re-query CCDS DB by GeneID:29862See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 85148.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000035244.5 ENSMUSP00000046306.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000035244.5Link to Ensembl Protein Viewer:ENSMUSP00000046306.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000035244Re-query CCDS DB by Protein ID:ENSMUSP00000046306
Original member NCBI NM_001347432.1 NP_001334361.1 Updated not alive Link to Nucleotide Sequence:NM_001347432.1Link to Protein Sequence:NP_001334361.1Re-query CCDS DB by Nucleotide ID:NM_001347432Re-query CCDS DB by Protein ID:NP_001334361
Current member NCBI NM_001347432.2 NP_001334361.1 Accepted alive Link to Nucleotide Sequence:NM_001347432.2Link to Protein Sequence:NP_001334361.1Re-query CCDS DB by Nucleotide ID:NM_001347432Re-query CCDS DB by Protein ID:NP_001334361Link to BLAST:NP_001334361.1

Chromosomal Locations for CCDS 85148.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 120193904 120193906 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 120197903 120198134 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 120198643 120198809 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (402 nt):
ATGCACAGGCACTCCATGCGCGGAGGGAACCAGCGCATAGACCTGAACTTTTATGCCACCAAGAAGAGTG
TGGCAGAGAGCATGCTAGACGTGGCGCTCTTTATGTCCAATGCCATGCGGCTGAAATCAGTGCTGCAGCA
AGGGCCATTCGCGGAGTACTACACCACCCTAGTCACCCTCATCATTGTCTCTCTGCTCCTGCAAGTGGTC
ATTAGCCTCCTTCTTGTGTTCATCGCCATCCTGAACCTGAATGAGGTAGAGAACCAGAGGCATTTAAATA
AGCTCAACAATGCTGCCACCATCTTGGTCTTCATAACCGTGGTCATCAACATTTTTATCACTGCTTTCGG
AGCACACCATGCAGCCTCCATGGCTGCCAGGACCTCCAGCAATCCTATTTGA

Translation (133 aa):
MHRHSMRGGNQRIDLNFYATKKSVAESMLDVALFMSNAMRLKSVLQQGPFAEYYTTLVTLIIVSLLLQVV
ISLLLVFIAILNLNEVENQRHLNKLNNAATILVFITVVINIFITAFGAHHAASMAARTSSNPI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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