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Report for CCDS35935.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35935.1 Public Mus musculus 10 Bcr 23 108 98 CCDS HistoryNCBI Gene:110279Re-query CCDS DB by CCDS ID:35935.1See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 35935.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000164107.2 ENSMUSP00000126377.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000164107.2Link to Ensembl Protein Viewer:ENSMUSP00000126377.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000164107Re-query CCDS DB by Protein ID:ENSMUSP00000126377
Original member NCBI NM_001081412.2 NP_001074881.1 Updated not alive Link to Nucleotide Sequence:NM_001081412.2Link to Protein Sequence:NP_001074881.1Re-query CCDS DB by Nucleotide ID:NM_001081412Re-query CCDS DB by Protein ID:NP_001074881
Current member NCBI NM_001081412.3 NP_001074881.1 Accepted alive Link to Nucleotide Sequence:NM_001081412.3Link to Protein Sequence:NP_001074881.1Re-query CCDS DB by Nucleotide ID:NM_001081412Re-query CCDS DB by Protein ID:NP_001074881Link to BLAST:NP_001074881.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001074881.1 1270 Q6PAJ1 1270 100% 0 0

Chromosomal Locations for CCDS 35935.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 75061026 75062310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 75125024 75125196 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 75131021 75131125 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 75131499 75131684 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 75135894 75136001 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 75140990 75141050 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 75143082 75143134 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 75145322 75145462 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 75153886 75154007 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 75154898 75155066 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 75157078 75157197 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 75158010 75158085 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 75159786 75159890 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 75160330 75160404 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 75166045 75166142 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 75168107 75168238 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 75175277 75175336 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 75176343 75176452 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 75177884 75178023 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 75180124 75180258 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 75181135 75181240 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 75181569 75181731 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 75182240 75182329 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3813 nt):
ATGGTGGACTCGGTGGGCTTCGCCGAGGCGTGGAGGGCGCAGTTCCCGGACTCGGAGCCGCCGCGCATGG
AGCTGCGCTCGGTGGGTGACATCGAGCAGGAGCTGGAGCGCTGCAAGGCCTCCATTAGGCGCTTGGAGCA
GGAGGTGAACCAGGAGCGCTTCCGCATGATCTACCTGCAGACGCTGCTGGCCAAGGAGAAGAAGAGCTAC
GATCGGCAGCGCTGGGGCTTCCGCCGTGCAGCGCAGCCCCCCGACGGCGCCGCCGAGCCCCGAGCGTCCG
CCCCGCGCCCGCCGCCCGCGCCCGCCGACGGCGCAGACCCGGCGCCCGTCGAGGAGTCCGAGGCGCGGCC
GGACGGAGAGGGGTCACCGAGTAAGGGGCGGTCAGCGTCCGCCCGCAGGCCAGCGGCTGCTGCATCGGCG
GACCGGGACGACCGAGGGCCCCCCACCAGCGTGGCGGCGCTCAGATCCAACTTCGAGAAGATCCGCAAGG
GACCTGCCCAGCCCGGCTCTGCCGACGCCGAGAAGCCCTTCTACGTGAACGTCGAGTTCCACCACGAGCG
CGGCCTGGTGAAGGTCAACGACAAAGAGGTGTCCGACCGAATCAGTTCCCTGGGCAGCCAGGCCATGCAA
ATGGAGCGCAAGAAGTCCCAGCAGAGCGCCGGGCAGGGCCTGGGGGAAGCACCCAGACCCCATTACCGTG
GGCGCTCCTCGGAAAGCAGTTGCGGCCTTGACGGTGACTATGAGGATGCAGAGTTGAATCCCCGCTTCCT
GAAGGACAACCTAATAAATGCCAACGGCGGCAACAGGCCCCCTTGGCCGCCCCTGGAGTACCAACCCTAC
CAGAGCATCTATGTCGGAGGCATGATGGTGGAAGGGGAGGGCAAGAGCCCTCTCCTGCGAAGCCAGAGCA
CTTCAGAGCAGGAGAAACGCCTAACCTGGCCTCGCAGGTCCTACTCGCCTCGGAGTTTCGAGGACAGCGG
AGGTGGCTACACGCCGGACTGCAGCTCCAACGAGAACCTCACCTCCAGCGAGGAGGACTTTTCCTCTGGC
CAGTCCAGCCGCGTGTCACCAAGCCCCACCACCTACCGCATGTTCCGGGACAAGAGCCGCTCACCCTCGC
AGAATTCGCAGCAGTCCTTTGACAGCAGCAGCCCCCCGACGCCACAGTGCCAGAAGCGGCACCGGCAGTG
CCAGGTTGTGGTGTCTGAGGCTACCATCGTGGGTGTCCGCAAGACTGGGCAGATCTGGCCCAGTGATGGG
GACAGCACCTTTCAAGGGGAAGCAGATTCCTCGTTTGGAACACCACCTGGATATGGCTGTGCCGCAGACC
AGGCTGAGGAACAGCGCCGGCACCAGGACGGGCTGCCCTACATCGATGATTCACCTTCTTCCTCGCCACA
CCTCAGCAGCAAAGGCAGAGGCAGCCTGGCCTCAGGCGCCCTGGATCCCACCAAAGTGAGTGAGCTGGAT
CTGGAAAAGGGCCTGGAGATGAGAAAGTGGGTTTTGTCCGGAATCCTGGCCAGCGAGGAGACGTACCTGA
GCCATCTGGAGGCCCTGCTGCTGCCCATGAAGCCTCTGAAAGCCGCTGCCACCACCTCTCAGCCTGTGCT
GACCAGCCAGCAGATTGAGACCATTTTCTTCAAAGTGCCTGAGCTCTACGAGATCCACAAGGAGTTCTAC
GATGGGCTGTTCCCCCGAGTGCAGCAGTGGAGCCACCAGCAGCGTGTAGGGGACCTCTTCCAGAAGCTGG
CCAGCCAGCTGGGTGTGTACCGAGCCTTTGTGGATAACTACGGAGTGGCCATGGAAACTGCAGAGAAGTG
CTGTCAGGCCAACGCTCAGTTTGCAGAAATCTCTGAGAACCTGCGAGCCAGAAGCAACAAGGATGTCAAG
GACTCAACTACCAAGAACTCTTTGGAAACTCTGCTCTACAAACCTGTGGACCGGGTGACGAGGAGCACGC
TAGTCCTTCACGACTTGCTAAAACACACCCCGTCCAGCCATCCCGACCATTCCCTGCTGCAAGACGCCCT
CCGAATCTCTCAGAACTTCCTGTCCAGCATCAACGAGGAGATCACGCCCCGCCGACAGTCCATGACGGTG
AAAAAAGGAGAGCACCGGCAGCTGCTGAAGGACAGCTTTATGGTAGAGCTGGTGGAGGGGGCCCGCAAGC
TGCGTCACATCTTCCTGTTCACTGACCTGCTCCTCTGCACCAAGCTGAAGAAGCAAAGTGGAGGCAAAAC
CCAGCAATATGACTGTAAATGGTACATTCCGCTCACGGACCTCAGCTTCCAGATGGTGGATGAATTGGAG
GCACTACCCAACATCCCTCTGGTGCCAGATGAGGAACTGGATGCCTTGAAGATCAAAATCTCCCAAATCA
AGAGCGACATCCAACGAGAGAAGAGAGCAAATAAGGGCAGCAAGGTCATGGAGAGGCTGAGGAAGAAGCT
GTCAGAGCAGGAGTCACTGCTGCTGTTAATGTCTCCCAGCATGGCCTTCCGCGTTCACAGTCGCAACGGC
AAGAGTTACACGTTCCTTATTTCCTCTGACTATGAGCGAGCCGAGTGGAGAGAAAGCATCCGAGAGCAGC
AGAAGAAATGTTTCAAAAGTTTCTCTCTGACATCTGTGGAGCTACAAATGCTGACCAACTCATGTGTAAA
ACTTCAGACGGTTCACCACATTCCACTGACCATCAACAAAGAAGATGACGAGTCTCCTGGACTCTACGGC
TTCCTGCATGTCATCGTCCACTCAGCCACCGGCTTTAAGCAGAGCTCAAATCTCTACTGCACCCTGGAGG
TGGATTCCTTTGGATATTTTGTGAATAAAGCAAAGACTCGAGTCTACAGGGACACAACTGAGCCAAACTG
GAATGAGGAGTTTGAGATAGAGCTAGAAGGCTCCCAGACCCTGCGGATACTATGTTATGAAAAGTGTTAC
AACAAAATGAAGATGACGAAGGAAGATGGTGAGAGCGCAGACAAGCTCATGGGGAAAGGCCAGGTCCAGC
TGGACCCCCAAACCCTACAGGACAGAGACTGGCAGCGGACTGTCATCGACATGAATGGAATTGAAGTGAA
ACTCTCCGTCAAGTTCACGAGCAGGGAGTTCAGCCTGAAGAGAATGCCCTCCCGCAAACAGACAGGGGTC
TTCGGTGTCAAGATTGCTGTAGTCACAAAGAGAGAGAGGTCCAAGGTACCTTACATTGTGCGCCAGTGTG
TGGAAGAGATCGAGCGCCGGGGTATGGAGGAGGTGGGCATCTACCGAGTGTCTGGAGTGGCCACAGACAT
CCAGGCACTGAAGGCAGCCTTTGATGTCAATAACAAGGATGTGTCCGTGATGATGAGCGAGATGGACGTG
AACGCCATTGCCGGCACGCTGAAGCTCTACTTCCGTGAGCTGCCCGAGCCCCTCTTCACGGATGAGTTCT
ACCCTAACTTCGCAGAAGGCATTGCTCTTTCAGACCCCGTCGCAAAGGAGAGCTGCATGCTGAACCTGCT
GCTGTCCCTCCCAGAAGCCAACCTGCTCACCTTCCTCTTCCTCCTGGACCACCTGAAAAGGGTAGCTGAA
AAGGAGACGGTGAACAAGATGTCCCTGCACAACCTCGCCACGGTCTTTGGCCCCACACTGCTTCGGCCCT
CAGAGAAGGAAAGCAAGCTCCCTGCTAACCCCAGCCAGCCCATCACCATGACTGACAGCTGGTCCCTGGA
GGTCATGTCCCAGGTCCAAGTGTTGCTGTACTTCCTGCAGCTGGAGGCCATCCCTGCCCCTGACAGCAAG
AGACAGAGCATCCTGTTTTCCACTGAAGTCTAA

Translation (1270 aa):
MVDSVGFAEAWRAQFPDSEPPRMELRSVGDIEQELERCKASIRRLEQEVNQERFRMIYLQTLLAKEKKSY
DRQRWGFRRAAQPPDGAAEPRASAPRPPPAPADGADPAPVEESEARPDGEGSPSKGRSASARRPAAAASA
DRDDRGPPTSVAALRSNFEKIRKGPAQPGSADAEKPFYVNVEFHHERGLVKVNDKEVSDRISSLGSQAMQ
MERKKSQQSAGQGLGEAPRPHYRGRSSESSCGLDGDYEDAELNPRFLKDNLINANGGNRPPWPPLEYQPY
QSIYVGGMMVEGEGKSPLLRSQSTSEQEKRLTWPRRSYSPRSFEDSGGGYTPDCSSNENLTSSEEDFSSG
QSSRVSPSPTTYRMFRDKSRSPSQNSQQSFDSSSPPTPQCQKRHRQCQVVVSEATIVGVRKTGQIWPSDG
DSTFQGEADSSFGTPPGYGCAADQAEEQRRHQDGLPYIDDSPSSSPHLSSKGRGSLASGALDPTKVSELD
LEKGLEMRKWVLSGILASEETYLSHLEALLLPMKPLKAAATTSQPVLTSQQIETIFFKVPELYEIHKEFY
DGLFPRVQQWSHQQRVGDLFQKLASQLGVYRAFVDNYGVAMETAEKCCQANAQFAEISENLRARSNKDVK
DSTTKNSLETLLYKPVDRVTRSTLVLHDLLKHTPSSHPDHSLLQDALRISQNFLSSINEEITPRRQSMTV
KKGEHRQLLKDSFMVELVEGARKLRHIFLFTDLLLCTKLKKQSGGKTQQYDCKWYIPLTDLSFQMVDELE
ALPNIPLVPDEELDALKIKISQIKSDIQREKRANKGSKVMERLRKKLSEQESLLLLMSPSMAFRVHSRNG
KSYTFLISSDYERAEWRESIREQQKKCFKSFSLTSVELQMLTNSCVKLQTVHHIPLTINKEDDESPGLYG
FLHVIVHSATGFKQSSNLYCTLEVDSFGYFVNKAKTRVYRDTTEPNWNEEFEIELEGSQTLRILCYEKCY
NKMKMTKEDGESADKLMGKGQVQLDPQTLQDRDWQRTVIDMNGIEVKLSVKFTSREFSLKRMPSRKQTGV
FGVKIAVVTKRERSKVPYIVRQCVEEIERRGMEEVGIYRVSGVATDIQALKAAFDVNNKDVSVMMSEMDV
NAIAGTLKLYFRELPEPLFTDEFYPNFAEGIALSDPVAKESCMLNLLLSLPEANLLTFLFLLDHLKRVAE
KETVNKMSLHNLATVFGPTLLRPSEKESKLPANPSQPITMTDSWSLEVMSQVQVLLYFLQLEAIPAPDSK
RQSILFSTEV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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