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Report for CCDS84171.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
84171.1 Public Mus musculus 15 Oc90 23 108 98 CCDS HistoryNCBI Gene:18256Re-query CCDS DB by CCDS ID:84171.1Re-query CCDS DB by GeneID:18256See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 84171.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000079776.13 ENSMUSP00000078709.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000079776.13Link to Ensembl Protein Viewer:ENSMUSP00000078709.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000079776Re-query CCDS DB by Protein ID:ENSMUSP00000078709
Original member NCBI NM_001347038.1 NP_001333967.1 Updated not alive Link to Nucleotide Sequence:NM_001347038.1Link to Protein Sequence:NP_001333967.1Re-query CCDS DB by Nucleotide ID:NM_001347038Re-query CCDS DB by Protein ID:NP_001333967
Current member NCBI NM_001347038.2 NP_001333967.1 Accepted alive Link to Nucleotide Sequence:NM_001347038.2Link to Protein Sequence:NP_001333967.1Re-query CCDS DB by Nucleotide ID:NM_001347038Re-query CCDS DB by Protein ID:NP_001333967Link to BLAST:NP_001333967.1

Chromosomal Locations for CCDS 84171.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 65876298 65876587 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 65878727 65878833 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 65881504 65881678 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 65882525 65882638 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 65883821 65883874 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 65889408 65889446 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 65889585 65889713 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 65892352 65892464 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 65897666 65897840 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 65900591 65900647 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 65901503 65901565 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 65908960 65909005 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1362 nt):
ATGATTATGCTGCTCATGGTCGGTATGCTGATGGCCCCCTGTGTTGGGGCCCATGCTCTGGACACACCAA
ATCCCCAGGAATTGCCTCCAGGACTGTCAAAAAATATAAATATCACTTTCTTCAATGGAGTGTTTAAAAA
CGTGGAAAGTGTGGCTGAAATTTTTGACTGCCTAGGTTCCCACTTCACCTGGCTGCAGGCTGTCTTCACC
AACTTCCCGCTGCTCCTCCAGTTTGTAAACAGTATGAGGTGTGTAACTGGCCTCTGCCCCCGGGACTTTG
AAGACTATGGTTGTGCCTGTAGGTTTGAGATGGAAGGGATGCCTGTGGACGAGTCTGATATCTGCTGCTT
CCAGCATCGCAGGTGCTATGAGGAAGCTGTTGAGATGGACTGTCTCCAAGACCCTGCCAAGCTCAGTGCA
GATGTGGATTGCACCAACAAACAGATCACATGTGAGTCCGAGGATCCCTGTGAGCGTCTACTGTGTACGT
GTGACAAGGCTGCTGTGGAGTGCCTGGCTCAGTCTGGCATCAACTCCTCCCTGAACTTCCTGGATGCTTC
CTTCTGCCTCCCTCAGACTCCAGAGACAACTAGTGGGAAGGCTGCAACACTGTTGCCTAGAGAGTCTGTT
CAAGATCTTCAAGACACACAAGCTTCTAGGACCACATCAAGTCCAGGATCTGCAGAGATTATTGCCCTAG
CCAAAGGTACAACCCACTCTGCTGGCATCAAACCACTGAGGTTGGGAGTCTCATCTGTTGACAATGGTTC
CCAGGAAGCAGCTGGAAAAGCAGCCTGTGACAGATTGGCCTTCGTGCATCTGGGTGATGGGGACAGCATG
ACGGCCATGCTGCAGCTTGGAGAGATGCTCTTCTGTCTAACATCCCATTGCCCAGAGGAATTTGAAACTT
ACGGCTGCTACTGTGGAAGAGAAGGAAGAGGAGAGCCAAGGGACACCCTGGATAGGTGCTGTCTGTCCCA
TCACTGCTGTTTGGAGCAGATGAGACAAGTGGGCTGCCTCCATGGAAGGCGTTCTCAGTCATCTGTGGTA
TGTGAAGACCACATGGCCAAATGTGTGGGGCAGAGCCTGTGTGAGAAGCTACTATGTGCCTGTGACCAGA
TGGCAGCTGAGTGCATGGCCTCTGCCTTCTTTAATCAAAGCCTCAAGTCACCAGACGGAGCCGAGTGTCA
AGGCGAGCCTGTGTCCTGTGAGGATGGCATGCTCCAGGGCACCTTGGCCTCTTCTGTGGACTCCAGTTCT
GAGGAGAATAGTGAGGAAGCTCCACCGCAGATGGAACGCCTAAGAAGATTTCTGGAAAAGCCTCCTGGTC
CCTTGGGGGCCAGACCCCTCGGTGGGAAATAA

Translation (453 aa):
MIMLLMVGMLMAPCVGAHALDTPNPQELPPGLSKNINITFFNGVFKNVESVAEIFDCLGSHFTWLQAVFT
NFPLLLQFVNSMRCVTGLCPRDFEDYGCACRFEMEGMPVDESDICCFQHRRCYEEAVEMDCLQDPAKLSA
DVDCTNKQITCESEDPCERLLCTCDKAAVECLAQSGINSSLNFLDASFCLPQTPETTSGKAATLLPRESV
QDLQDTQASRTTSSPGSAEIIALAKGTTHSAGIKPLRLGVSSVDNGSQEAAGKAACDRLAFVHLGDGDSM
TAMLQLGEMLFCLTSHCPEEFETYGCYCGREGRGEPRDTLDRCCLSHHCCLEQMRQVGCLHGRRSQSSVV
CEDHMAKCVGQSLCEKLLCACDQMAAECMASAFFNQSLKSPDGAECQGEPVSCEDGMLQGTLASSVDSSS
EENSEEAPPQMERLRRFLEKPPGPLGARPLGGK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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