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Report for CCDS84789.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
84789.1 Public Mus musculus 4 Rlf 23 108 98 CCDS HistoryNCBI Gene:109263Re-query CCDS DB by CCDS ID:84789.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 84789.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000056635.12 ENSMUSP00000050825.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000056635.12Link to Ensembl Protein Viewer:ENSMUSP00000050825.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000056635Re-query CCDS DB by Protein ID:ENSMUSP00000050825
Original member Current member NCBI NM_001346660.1 NP_001333589.1 Accepted alive Link to Nucleotide Sequence:NM_001346660.1Link to Protein Sequence:NP_001333589.1Re-query CCDS DB by Nucleotide ID:NM_001346660Re-query CCDS DB by Protein ID:NP_001333589Link to BLAST:NP_001333589.1

Chromosomal Locations for CCDS 84789.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 121146355 121151022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 121154856 121154997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 121159192 121159328 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 121170618 121170820 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 121182606 121182738 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 121188215 121188296 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 121190104 121190258 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 121214835 121215071 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (5757 nt):
ATGGCGGACGGAAAGGGAGACGCCACGGCCGCCGCCGGGGCCGGGGCTGGGGCTGAGGCTCCGGCGGTGG
CGGGAGCCGAAGTCGAGACTGAGTCCATGGCTCGGGGTCATCGCCCTGCATCTCCGGCGTCGGGAGCGCC
GGGCCTACGACCGTGTCTCTGGCAGCTGGAGACCGAGCTGAGGGAGCAGGAGGTGTCCGAGGTCTCATCT
TTGAGCTACTGCCGGAGCTTCTGCCAGACCTTATTGCAATATGCAAGCAACAAGAATGCATCAGAACACA
TTGTGTATCTTCTGGAGGTATACCGCCTCGCTATCCAAAGCTTTGCCAGCGCACGTCCATTTCTAACTAC
TGAATGTGAAGATGTTCTCTTAGTGCTTGGCAGATTAGTCCTGAGTTGTTTTGAATTACTGCTTTCAGTG
TCTGAAAGTGAACTGCCCTGTGAAGTCTGGGTACCATTCCTTCAGTCTCTACAGGAGTCACATGATGCAT
TGTTGGAATTTGGAAATAATAATTTACAAATACTGGTTCATGTTACAAAAGAAGGAGTGTGGAAAAACCC
CATTCTTCTTAAAATTCTGTCACAACAGCCAGTAGAGACAGAGGAAGTTAACAAATTGATTGCACAAGAA
GGACCTTCCTTTCTACAAATGAGAATCAAGCATTTGTTGAAGTCTAACTGCATCCCCCAAGCTACTGCTT
TATCAAAACTGTGTGCAGAGTCTAAAGAACTTGCCCAGGTGTCGTGTTTTCAGCAAGCCTATATCACATG
TTTATGTTCCATGCTTCCCAGCGAAGAGGCTATTCAGGAGATTGCAAAGGTGGACTGCAAGGACGTGTTA
GACATCATATGTAATCTGGAATCTGAGGGTCAGGATAACACAGCATTTGTTCTTTGTACAACTTACCTTA
CCCAGCAGCTCCAAACGGCCAGTGTATATTGTTCTTGGGAGCTGACTCTCTTTTGGAGTAAACTGCAAAG
AAGAATTGACCCATCTTTGGAGACATTTTTGGAGCGTTGTCGGCAGTTTGGTGTCATAGCTAAAACACAA
CAGCATTTATTTTGCCTGATTAGAGTCATACAGACTGAAGCACAAGATGCTGGCATTGGGGTATCAATTT
TATTATGTGTCAGAGCTCTTCAACTCAGATCAAGTGAAGATGAGGAAATGAAAGCTTCGGTCTGTAAAAC
AATTTCCTGTCTTTTACCAGAAGATTTGGAAGTCAGACGAGCCTGTCAGCTTACAGAATTCTTAATTGAA
CCCAGTTTGGATGGATTCAATATGCTGGAAGAACTGTATTTGCAGCCAGATCAAAAATTTGATGAAGAAA
ACGCACCAGTTCCAAATTCCCTGCGGTGTGAGCTTTTACTAGCTTTAAAAGCCCATTGGCCCTTTGATCC
TGAATTTTGGGACTGGAAAACTTTGAAGCGACACTGCCACCAACTCCTGGGACAAGAAGCCTCAGATTCC
GATGATGACCTAAGTGGCTATGAAATGTCTATTAATGATACAGATGTCTTAGAGTCATTTCTCAGTGACT
ATGATGATGGAAAAGAAGATAAGCAATATAGAAGAAGTCTAACAGATCAGAATAAGGAGAAAAGAGACAA
AAAGCCCATTGGTTCCTCTGAGAGATACCAGAGGTGGCTTCAGTATAAGTTTTTCTGTTTGTTGTGTAAG
CGGGAATGCATAGAGGCCAGGATTCTCCATCATTCCAAGATGCACATGGAAGATGGAATATATACCTGTC
CAGTTTGTATTAAAAAATTCAAGAGAAAAGAGCTATTTGTTCCTCACGTAATGGAACATGTTAAAATGCC
ACCAAGCAGAAGCCACCGTTCTAGAAAGAAATTACTATTGAAAAGCGCTCAAAGGGGTATTTATCCCAAG
AGTCCTACTGGAAGTCTGGAACAAAATCCAGAGCAAGCCAGGGGAGAGTCTCATGAATATGTCACATTTA
GCAAGTTAGAAGACCGCCGCCTGCAAGACAGAGACTTGTACCCGTGTCCGGGTACAGATTGTTCCCGTGT
GTTCAAACAGTTTAAATATTTAAGCGTGCATCTTAAAGCTGAACACCAAAATAATGACGAAAACGCCAAG
CACTACTTGGATATGAAAAATAGGAGAGAGAAGTGTACTTATTGCCGGCGGCATTTCATGTCAGCTTTTC
ACCTCCGAGAACATGAGCAGGTGCATTGTGGTCCTCAGCCTTACATGTGTGTCTCTATAGATTGCTATGC
AAGGTTTGGGTCAGTGAATGAACTCCTTAACCACAAGCAGAAGCATGATGACCTCCGTTACAAATGTGAG
TTGAATGGCTGCAATATTGTGTTCAGTGACTTGGGCCAGCTTTACCACCATGAAGCACAACACTTCAGGG
ATGCATCCTACACATGCAATGTCCTTGGCTGTAAAAAGTTCTATTATTCTAAAATTGAATACCAGAACCA
CCTCTCCATGCATAATGTTGAAAGTCCAGATGGAGAATTAAAGAAATCAGTGAAACTTGAGGAACCTGGA
GCAGGTGGGAAGCAAGATTGTGTGGACCAGTCCCATCTACTTGATGAAACTGAGAAGTCCCATTCTCTTG
AAGATCACCATCTCTGTCCAGGGTCAGCTAGTGCTCATATAGACACCACAGAGACCCTGAAGGACAACAG
CGACAGCAATTCTAGTGATCAGTTAAGTCACAGCTCTTCCACGTCAATAACTGAGGAGTTAATTGACACC
CTAGACCACTCTGAAACCATGCAGGACCTGTTACTGTCTCATGAGAAAGTCTTTGTTCCCTCCAGTTTAA
AAGACAAGTGCTCCAATGTGGCTGTTTGTTTTGATGGAACTAAATTCACCTGTGGTTTTGACGGCTGTGG
CTCCACCTACAAAAACGCAAGAGGGATGCAGAAACATCTGCGGAAGGTGCATCCGTACCACTGCAAGCCA
AGAAAAATAAAGACAAAAGACCTCTTTAACTGCCTGGATGACAAACATAATGAAGCTGACAAGTTTGATG
CAGAACCTAAACCTAGCTCTGATACAAATAGTGACTCCCCAGATGAAGGTCCAGATCACAGTATCCACAC
AAAATGCAAACGAGAACATCAAGGTTATTCCCCTGAACCTTCCATTTGTGCTTCTAAAAGGCCATGTACA
GAGGATACAATGTTGGAACTTCTGTTACGTTTGAAACATTTAAGCTTGAAGAACTCAATAGCACATGGCT
CTTTCTCAGGGTCATTGCAAGGGTGCCCATCTAGTGGTGCTAAGTCTCTTCAGTCAGTCCCATCTTCCAT
TTCAGACGTTAATCTTCAGAATCAGGATGAAAATATGCCAAGTCAGTACCTTGCACAGTTGGCGGCAAAG
CCTTTCTTCTGTGAGCTTCAAGGATGCAAATATGAGTTTGTGACCAGAGAAGCTTTGTTAATGCATTATC
TTAAAAAGCATAACTATTCAAAAGAGAAGGTCCTTCAGTTAACCATGTTTCAGCACCGATATTCCCCATT
CCGGTGTCACATCTGCCAAAGGTCATTTACAAGAAAAACACATCTTAGGATTCATTATAAAAACAAACAT
CAAATTGGCAGTGACAGGGCAACTCACAGACTGTTAGACAGTGAAAAATGTGATCATGAAGGGCCATGCT
CAGTAGACAGACTGAAAGGTGACTGCTCTACAGAACTTGGTCCCAACAGTAATTCAGAGACCACGCAATG
TCATTCTAAAAAAGATGAATGCAGCTCAGAAACAGACTTGGAGTCCTCTTGTGAGGAAACAGAAAGTAAG
ATCTCTGGTATCTCATCACCAATAGGTAGCCATAGAGAAGAGGGAGAGGAGAAAGAGGGGAGAGGAAGTA
GGCGGACTGTTGCTAAAGGAAATCTGTGCTATATTTTGAATAAGTACCACAAACCATTCCATTGTATCCA
CAAAACTTGCAATTCTTCATTTACCAATCTAAAAGGCCTGATTCGCCATTACAGAACTGTGCATCAGTAC
AACAAAGAGCAGTTATGCTTAGAGAAGGACAAAGCAAGAACCAAAAGGGAGCTTGTAAAATGTAAAAAGC
TATTTGCTTGCAAATATAAAGACTGTAACAAGCGCTTCCTGTGCTCCAAGGCCCTGGCTAAGCACTGTAG
TGACTCTCATAACCTAGACCACATTGAAGAGTCTAAAGTGCTTTCTGAGACGGAGTCTGCAGCGAGGTTT
TCTTGTAACCAGCCTCAGTGCCCTGCTGTTTTTTATTCATTCAGTAAGTTGAAACACCACCTGTTGGAAC
AGCATAATATTGAAGGAGAAATCCATTCGGATTATGAGATCCATTGTACTCTTAATGGCTGTGGCCAGAT
TTTCAGCCATCGAAGTAATTACTTCCAGCATGTCTACTACCGACATAAGGACTATTATGACAACCTGTTC
AGCAGCCAGAAAGTAGCAAATGAGCGGCTTCTAAGGAGTGAAAAGGTGTGTCAGACAACTCAGGCACAAG
GACTGACGCAGACGCAGGGGCAGACACAGGGACAGACGCAGGGACAGGAACAGCAGGCTGCCAAAAGGCC
ATTTAATACTAAAGCTAAAAAATGTGGCTTACTCAAAGATAAAAAAGCTCCAATTACCTTTAAAACAAGA
GCAGAAGCGATCCATATGTGTGTTGAGCATTCTGAGCACACACAGTACCCGTGCATGGTTCAGGGATGCT
TGTCTGTGGTGAAGCTGGAAAGCAGCATTGTGAGACATTACAAACGTACCCACCAGATGAATAGTGCCTA
TTTAGAGCAGCAGTTGGAGAACCTTGTGGTTTGTGTTAAGTATGGTACCAAAATTAAAGACGAGCCCCCT
TCAGAAGTAGAGCCCTGTGTAAAGAAAGAGGAAAGTACTAGCTGTGAATCGGTGCACACAGAGAATGGAG
CCCCAGGAGACAGCAGTGTGCCCCTCCCAAACACTGATTCTACTTGCCCAGCTGAACAAGATGTCGGTCA
GAAAGGGTGTTCAGAAAGAAACCCAGTTTTTGACACACACAGTCTGCTCTACAGGGGAACTTTGAAATGC
AACCATTCTTCAGAAACCACTTCTTTGGAACAGTGTAATATAGCTCAGTCTTCTCCCTGTAAAATAGAAA
GCCCCATACCTAATCCCAGTGGGACAGAAAGTGGTACTTATTTCACGGACTTCCAGCTGCCATTACCAAG
GATCAAAGAAGAACCTGGGCAGCATAGTTCAGGGCAAGAAAACACTGTAAAGAATGCAACCCAGGTCCCA
AAAGAGAATATTAGAAAGCATTCTCAGCCCAGGTCATTTGATCTGAAGACTTACAAACCTATGGGATTTG
AGTCTTCCTTTCTGAAATTTATTCAGGAAAGTGAAGAGAAGGATGATGATTTTGATGACTGGGAGCCTTC
AGAGCACTTAACATTGAATAACTCCTCTCACCCCAGTAATGACTTGACAGGGAATGTTGTGGCAGATACC
ATAGTGAATGAGAGTGCCCCTCAAGTTGACATACCTCATTCTTCCAGTGACCCTCCAGTTTCAGAGAACC
TGACTGCAGTCCCACCATTAGTAGTAGCTGAAGCAACAGCAGTTCCTTCCTTGGAAAACCTGAGGGTTGT
GCTGGACAAAGCATTAACAGACTGTGGAGAACTTGCCTTAAAACAGCTTCATTACCTTCGGCCTGTGGTT
GTCCTTGAAAGATCTAAGTTCTCTACACCAATTTTAGACTTGTTTCCAACTAAGAAGACAGATGAGCTTT
GTGTAGGAAGTTCCTGA

Translation (1918 aa):
MADGKGDATAAAGAGAGAEAPAVAGAEVETESMARGHRPASPASGAPGLRPCLWQLETELREQEVSEVSS
LSYCRSFCQTLLQYASNKNASEHIVYLLEVYRLAIQSFASARPFLTTECEDVLLVLGRLVLSCFELLLSV
SESELPCEVWVPFLQSLQESHDALLEFGNNNLQILVHVTKEGVWKNPILLKILSQQPVETEEVNKLIAQE
GPSFLQMRIKHLLKSNCIPQATALSKLCAESKELAQVSCFQQAYITCLCSMLPSEEAIQEIAKVDCKDVL
DIICNLESEGQDNTAFVLCTTYLTQQLQTASVYCSWELTLFWSKLQRRIDPSLETFLERCRQFGVIAKTQ
QHLFCLIRVIQTEAQDAGIGVSILLCVRALQLRSSEDEEMKASVCKTISCLLPEDLEVRRACQLTEFLIE
PSLDGFNMLEELYLQPDQKFDEENAPVPNSLRCELLLALKAHWPFDPEFWDWKTLKRHCHQLLGQEASDS
DDDLSGYEMSINDTDVLESFLSDYDDGKEDKQYRRSLTDQNKEKRDKKPIGSSERYQRWLQYKFFCLLCK
RECIEARILHHSKMHMEDGIYTCPVCIKKFKRKELFVPHVMEHVKMPPSRSHRSRKKLLLKSAQRGIYPK
SPTGSLEQNPEQARGESHEYVTFSKLEDRRLQDRDLYPCPGTDCSRVFKQFKYLSVHLKAEHQNNDENAK
HYLDMKNRREKCTYCRRHFMSAFHLREHEQVHCGPQPYMCVSIDCYARFGSVNELLNHKQKHDDLRYKCE
LNGCNIVFSDLGQLYHHEAQHFRDASYTCNVLGCKKFYYSKIEYQNHLSMHNVESPDGELKKSVKLEEPG
AGGKQDCVDQSHLLDETEKSHSLEDHHLCPGSASAHIDTTETLKDNSDSNSSDQLSHSSSTSITEELIDT
LDHSETMQDLLLSHEKVFVPSSLKDKCSNVAVCFDGTKFTCGFDGCGSTYKNARGMQKHLRKVHPYHCKP
RKIKTKDLFNCLDDKHNEADKFDAEPKPSSDTNSDSPDEGPDHSIHTKCKREHQGYSPEPSICASKRPCT
EDTMLELLLRLKHLSLKNSIAHGSFSGSLQGCPSSGAKSLQSVPSSISDVNLQNQDENMPSQYLAQLAAK
PFFCELQGCKYEFVTREALLMHYLKKHNYSKEKVLQLTMFQHRYSPFRCHICQRSFTRKTHLRIHYKNKH
QIGSDRATHRLLDSEKCDHEGPCSVDRLKGDCSTELGPNSNSETTQCHSKKDECSSETDLESSCEETESK
ISGISSPIGSHREEGEEKEGRGSRRTVAKGNLCYILNKYHKPFHCIHKTCNSSFTNLKGLIRHYRTVHQY
NKEQLCLEKDKARTKRELVKCKKLFACKYKDCNKRFLCSKALAKHCSDSHNLDHIEESKVLSETESAARF
SCNQPQCPAVFYSFSKLKHHLLEQHNIEGEIHSDYEIHCTLNGCGQIFSHRSNYFQHVYYRHKDYYDNLF
SSQKVANERLLRSEKVCQTTQAQGLTQTQGQTQGQTQGQEQQAAKRPFNTKAKKCGLLKDKKAPITFKTR
AEAIHMCVEHSEHTQYPCMVQGCLSVVKLESSIVRHYKRTHQMNSAYLEQQLENLVVCVKYGTKIKDEPP
SEVEPCVKKEESTSCESVHTENGAPGDSSVPLPNTDSTCPAEQDVGQKGCSERNPVFDTHSLLYRGTLKC
NHSSETTSLEQCNIAQSSPCKIESPIPNPSGTESGTYFTDFQLPLPRIKEEPGQHSSGQENTVKNATQVP
KENIRKHSQPRSFDLKTYKPMGFESSFLKFIQESEEKDDDFDDWEPSEHLTLNNSSHPSNDLTGNVVADT
IVNESAPQVDIPHSSSDPPVSENLTAVPPLVVAEATAVPSLENLRVVLDKALTDCGELALKQLHYLRPVV
VLERSKFSTPILDLFPTKKTDELCVGSS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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