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Report for CCDS85670.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
85670.1 Public Mus musculus 9 Ube4a 23 108 98 CCDS HistoryNCBI Gene:140630Re-query CCDS DB by CCDS ID:85670.1Re-query CCDS DB by GeneID:140630See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 85670.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000117549.7 ENSMUSP00000112632.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000117549.7Link to Ensembl Protein Viewer:ENSMUSP00000112632.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000117549Re-query CCDS DB by Protein ID:ENSMUSP00000112632
Original member Current member NCBI NM_001346698.1 NP_001333627.1 Accepted alive Link to Nucleotide Sequence:NM_001346698.1Link to Protein Sequence:NP_001333627.1Re-query CCDS DB by Nucleotide ID:NM_001346698Re-query CCDS DB by Protein ID:NP_001333627Link to BLAST:NP_001333627.1

Chromosomal Locations for CCDS 85670.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 44925849 44925975 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44929662 44929819 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44932342 44932489 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44933298 44933478 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44935327 44935501 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44937633 44937746 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44937849 44937949 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44939961 44940148 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44941154 44941286 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44942566 44942870 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44944805 44944925 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44946184 44946517 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44948026 44948217 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44948782 44948984 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44949733 44949892 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44950781 44950933 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44951990 44952102 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44952942 44953172 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44959979 44960099 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3258 nt):
ATGACAGACCAGGAGAATAACAACAACATCTCAAGTAACCCCTTTGCTGCTCTTTTTGGCTCCCTGGCTG
ATGCCAAGCAGTTTGCAGCAATCCAGAAAGAGCAGCTGAAGCAGCAGTCCGGTAGTGTATTTGGTTCTGA
GGAAGAAGCGTTGTGTAACAGCTTACATGTTCCAGCAGATGAGCTCCCAGCAAGCCCAGATGACTCGGAT
AATAGTGTGTCAGAGAGCCTGGATGAGTTTGACTACTCTGTATCTGAGATTAGCCGCTCCTTCCGGACAC
ACCAAGAAATGTGTGAGCAACTCAACATCAATCACATGATCCAGAGGATCTTCCTCATCACCCTGGACAA
CAGTGATCCAAGCTTGAAAAGCGGGAATGGCATCCCCAGCCGTTGTGTGTACTTGGAAGAAATGGCAGTA
GAGCTGGAAGATCAAGACTGGCTTGATATGAGCAATGTTGAGCAGGCCATCTTTGCTCGATTATTGCTTC
AAGATCCAGGAAACCACTTGATCAGCATGACTTCCTCCACAACTTTAAATCTCTCTGCTGATCGTGATGC
AGGAGAGAGGCACATCTTCTGTTACCTTTACTCCTGCTTCCAGAGAGCCAAGGAAGAGATTACCAAAGTT
CCAGAAAACCTACTCCCCTTTGCAGTGCAGTGCAGAAACCTCACTGTGTCCAACACTCGAACAGTTCTCC
TCACCCCAGAGATCTATGTTGACCAAAACATCCATGAGCAACTGGTAGATTTGATGTTGGAAGCTATTCA
GGGAGCCCATTTTGAAGATGTAACTGAATTTTTAGAAGAGGTCATTGAAGCCTTGCTGTTGGATGAGGAG
GTTCGAACATTTCCTGAAGTCATGATTCCAGTGTTTGATATTTTACTCAGCCGAATAAAAGATCTGGAAC
TCTGCCAGATCCTCCTGTATGCATATCTGGACATTCTTCTCTATTTCACTAGGCAGAAGGATATGGCCAA
GGTGTTTTTAGAATACATTCAGCCCAAGGATCCCAGCAATGGGCAGATGTATCAGAAGACCTTGCTGGGA
GTCATCCTGAATATCTCGTGCTTGTTAAAGACTCCGGGTGTGGTAGAGAACCATGGCTTCTTCCTGAATC
CATCCCGTTCCAGTCCTCAGGAGATCAAAGTACAGGAGGCCAACATCCATCAGTTCATGGCTCAGTTCCA
TGAAAAGATCTACCAGATGCTGAAGAACTTGCTCCAGCTCTCTCCAGAAACCAAGCACTGTATCTTGTTC
TGGCTTGGAAACTGTTTGCATGCAAATGCAGGCCGCACCAAGATCTGGGCCAATCAGATGCCCGAAATCT
TCTTCCAAATGTATGCCTCGGATGCCTTCTTTCTGAATCTGGGTGCTGCCCTCCTGAAGCTGTGCCAGCC
ATTCTGCAAGCCCAGATCCTCCCGGCTCCTCACCTTTAACCCCACGTACTGTGTCCTCAAGGACTTGAAT
GATGAAGAACGAAAAATTAAAAGTGTGCATATGAGAGGTTTGGACAAGGAGACCTGTCTGATCCCAGCTG
TGCAGGAGCCAACGTTCCCCCAGAGCTACAACCTTGTGACGGAGAACCTGGCCCTGACAGAGTATACCTT
GTACTTGGGATTTCACAGGTTGCATGATCAGATGGTAAAAATCAACCAAAATCTGCATCGGCTGCAGGTT
GCCTGGCGGGATGCTCAGCAGAGTTCTAGCCCTGCTGCTGACAATCTCCGTGAGCAGTTCGAACGCCTGA
TGACCATCTATCTCTCTACCAAGACTGCTATGACTGAACCCCAGATGCTGCAAAACTGTCTGAATTTGCA
GGTGTCCATGGCTGTTCTGCTGGTTCAACTGGCCATAGGCAATGAGGGCTCCCAGCCAATAGAACTAAGT
TTCCCTTTGCCAGATGGCTACAGCTCTTTGGCTTATGTGCCAGAATTTTTTGCAGATAACTTGGGTGATT
TCCTCATTTTCCTCCGGCGCTTTGCTGAGGACATCTTGGAGACGTCAGCAGACTCCCTGGAGCATGTCCT
TCATTTTATCACCATTTTCACTGGAAGCATAGAAAGAATGAAGAATCCTCACCTGAGGGCCAAACTAGCA
GAGGTGTTAGAAGCAGTGATGCCTCACCTAGACCAGACCCCAAGCCCCTTGGTGTCCAGTGTGTTCCACC
GGAAACGTGTGTTCTGCAACTTTCCATACGCTCCCCAACTTGCAGAAGCTTTGATCAAGGTGTTTGTGGA
CATCGAGTTTACAGGGGACCCCCATCAATTTGAACAGAAGTTTAATTACCGCCGTCCTATGTATCCCATC
CTAAGATACATGTGGGGGACAGATTGCTATCGGGAGAGCATTAAGGATTTGGCTGACTATGCCTCTAAGA
ATTTAGAAGCTATGAATCCCCCACTGTTCCTCCGATTTCTTAACCTGTTAATGAATGATGCTATCTTCCT
TTTGGATGAAGCCATACAGTATTTGAGCAAGATAAAGATTCAGCAGATTGAGAAAGACCGAGGAGAATGG
GAGAGTCTGACACCAGAAGCCCGCCGAGAGAAAGAGGCAGGTCTGCAGATGTTTGGGCAGCTGGCACGGT
TCCATAACATCATGTCCAATGAAACAATTGGTACCCTTTCCTTCCTGACATCAGAGATCAAGTCGCTGTT
TGTGCATCCGTTCCTGGCCGAGCGCATCATCTCCATGCTCAACTACTTCCTGCAGCACCTGGTGGGCCCC
AAGATGGGTGCCCTCAAAGTCAAGGACTTCAGCGAATTTGACTTCAAACCTCAGCAGCTCGTATCAGACA
TCTGCACTATCTACTTAAATCTTGGGGATGAGGAGAACTTCTGTGCCACTGTGCCCAAAGACGGACGTTC
CTATTCTCCGACTCTCTTTGCACAGACAGTCCGTGTCCTGAAGAAAATCAATAAGCCCGGGAATATGATC
GTGGCTTTCAGTAACTTGGCAGAGAGAATCAAGTCTCTTGCAGACCTCCAACAACAAGAGGAGGAGACAT
ATGCAGACGCCTGTGATGAGTTCCTGGATCCCATCATGAGCACACTGATGTCTGACCCTGTGGTGCTTCC
ATCTTCCAGAGTCACTGTGGACAGATCCACCATTGCTAGGCATTTACTCAGTGACCAAACAGATCCTTTT
AACCGTAGTCCCCTTACCATGGACCAGATCCGGCCCAACACAGAACTGAAAGAAAAAATCCAACGGTGGC
TCGCAGAAAGGAAGCAACAAAAGGAGCAGCCTGAATAA

Translation (1085 aa):
MTDQENNNNISSNPFAALFGSLADAKQFAAIQKEQLKQQSGSVFGSEEEALCNSLHVPADELPASPDDSD
NSVSESLDEFDYSVSEISRSFRTHQEMCEQLNINHMIQRIFLITLDNSDPSLKSGNGIPSRCVYLEEMAV
ELEDQDWLDMSNVEQAIFARLLLQDPGNHLISMTSSTTLNLSADRDAGERHIFCYLYSCFQRAKEEITKV
PENLLPFAVQCRNLTVSNTRTVLLTPEIYVDQNIHEQLVDLMLEAIQGAHFEDVTEFLEEVIEALLLDEE
VRTFPEVMIPVFDILLSRIKDLELCQILLYAYLDILLYFTRQKDMAKVFLEYIQPKDPSNGQMYQKTLLG
VILNISCLLKTPGVVENHGFFLNPSRSSPQEIKVQEANIHQFMAQFHEKIYQMLKNLLQLSPETKHCILF
WLGNCLHANAGRTKIWANQMPEIFFQMYASDAFFLNLGAALLKLCQPFCKPRSSRLLTFNPTYCVLKDLN
DEERKIKSVHMRGLDKETCLIPAVQEPTFPQSYNLVTENLALTEYTLYLGFHRLHDQMVKINQNLHRLQV
AWRDAQQSSSPAADNLREQFERLMTIYLSTKTAMTEPQMLQNCLNLQVSMAVLLVQLAIGNEGSQPIELS
FPLPDGYSSLAYVPEFFADNLGDFLIFLRRFAEDILETSADSLEHVLHFITIFTGSIERMKNPHLRAKLA
EVLEAVMPHLDQTPSPLVSSVFHRKRVFCNFPYAPQLAEALIKVFVDIEFTGDPHQFEQKFNYRRPMYPI
LRYMWGTDCYRESIKDLADYASKNLEAMNPPLFLRFLNLLMNDAIFLLDEAIQYLSKIKIQQIEKDRGEW
ESLTPEARREKEAGLQMFGQLARFHNIMSNETIGTLSFLTSEIKSLFVHPFLAERIISMLNYFLQHLVGP
KMGALKVKDFSEFDFKPQQLVSDICTIYLNLGDEENFCATVPKDGRSYSPTLFAQTVRVLKKINKPGNMI
VAFSNLAERIKSLADLQQQEEETYADACDEFLDPIMSTLMSDPVVLPSSRVTVDRSTIARHLLSDQTDPF
NRSPLTMDQIRPNTELKEKIQRWLAERKQQKEQPE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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